HHsearch alignment for GI: 254780271 and conserved domain: COG1241
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair].
Probab=98.24 E-value=7.2e-06 Score=61.68 Aligned_cols=240 Identities=22% Similarity=0.261 Sum_probs=132.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHC
Q ss_conf 42030859999999999986588752121013552256835884073321769999999871853131012211111103
Q gi|254780271|r 76 DEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV 155 (424)
Q Consensus 76 d~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYv 155 (424)
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGD---InILLvGDPgtaKSqlLk~v~~~aPr~-vytsgkgss~~GLT 360 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGD---IHILLVGDPGTAKSQLLKYVAKLAPRG-VYTSGKGSSAAGLT 360 (682)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---EEEEECCCCCHHHHHHHHHHHHHCCCE-EEECCCCCCCCCCE
T ss_conf 15103819999999999608976647998620242---269981798251999999988648840-79726412545730
Q ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 5---5633035778876542277654223332233320023333334432102568988753105870102565564322
Q gi|254780271|r 156 G---EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP 232 (424)
Q Consensus 156 G---~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~ 232 (424)
T Consensus 361 Aav~rd~~-tg-e~~-LeaGALVlAD~Gv~cIDEfdKm~~--------------~dr~aihEaMEQQtIsIaKA------ 417 (682)
T COG1241 361 AAVVRDKV-TG-EWV-LEAGALVLADGGVCCIDEFDKMNE--------------EDRVAIHEAMEQQTISIAKA------ 417 (682)
T ss_pred EEEEECCC-CC-EEE-EECCEEEEECCCEEEEEECCCCCH--------------HHHHHHHHHHHHCEEEECCC------
T ss_conf 69997067-76-078-867779992497799970567776--------------78999999987527512055------
Q ss_pred CCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEE
Q ss_conf 24302431000123220004678988764123433321111000000016899964105677752206898720784267
Q gi|254780271|r 233 QQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLAT 312 (424)
Q Consensus 233 ~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~ 312 (424)
T Consensus 418 ----GI~atLnARcsvLAAa--------------NP~~Gry---d~~~~---~~e--------nI~l~~~lLSRFDLifv 465 (682)
T COG1241 418 ----GITATLNARCSVLAAA--------------NPKFGRY---DPKKT---VAE--------NINLPAPLLSRFDLIFV 465 (682)
T ss_pred ----CEEEECCHHHHHHHHH--------------CCCCCCC---CCCCC---HHH--------HCCCCHHHHHHCCEEEE
T ss_conf ----4254111444456651--------------8877767---99999---788--------55898357751775477
Q ss_pred ECCC-----CHHHHHHHHHHH--------------------HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CC-
Q ss_conf 2111-----057899998742--------------------67799999999874498999968999999995510-67-
Q gi|254780271|r 313 LEDL-----DENSLIRILSEP--------------------KNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HK- 365 (424)
Q Consensus 313 L~~L-----t~edl~rILtep--------------------knsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~n- 365 (424)
T Consensus 466 l~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~-~v~P~lt~ea~e~l~~~Yv~~Rk~ 544 (682)
T COG1241 466 LKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARK-NVTPVLTEEAREELEDYYVEMRKK 544 (682)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 0578885335999999999863456532233332222234658999999998750-589612899999999999876520
Q ss_pred -----------CCCHHHHHHH
Q ss_conf -----------8742368999
Q gi|254780271|r 366 -----------TGARGLRSIL 375 (424)
Q Consensus 366 -----------iGAR~LrtIi 375 (424)
T Consensus 545 ~~~~~~~~~~piT~RqLEsii 565 (682)
T COG1241 545 SALVEEKRTIPITARQLESII 565 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHH
T ss_conf 122345675456199999999