HHsearch alignment for GI: 254780271 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=98.10 E-value=6.3e-05 Score=55.05 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=125.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH-
Q ss_conf 2030859999999999986588752121013552256835884073321769999999871---853131012211111-
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA- 152 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~- 152 (424)
T Consensus 223 ~~iIG~S~am~~ll~~i----~~VA---------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 223 GGIIGRSPAMRQLLKEI----EVVA---------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred CCCCCCCHHHHHHHHHH----HHHH---------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 56230699999999999----9872---------6898079845888538999999987375557986663122253788
Q ss_pred ------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf ------10355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 153 ------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 153 ------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
T Consensus 290 lESELFGHeKGAF----TGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEi--eRv 349 (550)
T COG3604 290 LESELFGHEKGAF----TGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEI--ERV 349 (550)
T ss_pred HHHHHHCCCCCCC----CCCHHCCCCCEEECCCCEEECHHHCCCCHH--------------HHHHHHHHHHHCCE--EEC
T ss_conf 8888745332233----351014676356557975760220367877--------------88999999863652--534
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
T Consensus 350 G~~r-----~ikVDVRiI---AATN-RDL~~~V~~G------~-----------------------------FRaDLYyR 385 (550)
T COG3604 350 GGDR-----TIKVDVRVI---AATN-RDLEEMVRDG------E-----------------------------FRADLYYR 385 (550)
T ss_pred CCCC-----EEEEEEEEE---ECCC-HHHHHHHHCC------C-----------------------------CHHHHHHC
T ss_conf 7996-----367778998---2135-3099998749------5-----------------------------15545321
Q ss_pred CCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 7842-67211105--789999874267799999999874498-9999689999999955106787423689999996777
Q gi|254780271|r 307 LPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDV-ELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 307 lPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV-~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
T Consensus 386 LsV~Pl~lPPLRER~~DIpl-L---A~~Fle~~~~~---~gr~~l~ls~~Al~~L~~y~wPGN--VRELen~veRavlla 456 (550)
T COG3604 386 LSVFPLELPPLRERPEDIPL-L---AGYFLEKFRRR---LGRAILSLSAEALELLSSYEWPGN--VRELENVVERAVLLA 456 (550)
T ss_pred CCCCCCCCCCCCCCCCCHHH-H---HHHHHHHHHHH---CCCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHC
T ss_conf 02001378983458866799-9---99999999886---397640339899999973999971--999998999999970