HHsearch alignment for GI: 254780271 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=97.63 E-value=0.0014 Score=45.73 Aligned_cols=198 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHH--CCCE---EEHHHHH
Q ss_conf 742030859999999999986588752121013552256835884-073321769999999871--8531---3101221
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARII--DVPF---TMADATT 148 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILli-GPTGvGKTelAr~LAk~l--~~PF---~~vdaT~ 148 (424)
T Consensus 118 FdnFVvG~sN~l-A~aAA-----~~Va~~p---g---~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~ 185 (447)
T PRK00149 118 FDNFVVGKSNRL-AHAAA-----LAVAENP---G---KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEK 185 (447)
T ss_pred CCCCEECCCCHH-HHHHH-----HHHHHCC---C---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 326222698599-99999-----9998376---7---6778558977998878899999999999858997289954999
Q ss_pred HHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 1111---1035563303577887654227765422333223332002333333443210256898875310587010256
Q gi|254780271|r 149 LTEA---GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPP 225 (424)
Q Consensus 149 ~TE~---GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~ 225 (424)
T Consensus 186 F~~~~v~al~~~~~~~F-r~~---------yr~~DvLliDDiqfl~gk------------~~tqeeff~~fn~l~~---- 239 (447)
T PRK00149 186 FTNDFVKALRNNAMEEF-KEK---------YRSVDVLLIDDIQFLAGK------------EKTQEEFFHTFNALHE---- 239 (447)
T ss_pred HHHHHHHHHHCCCHHHH-HHH---------HHCCCEEEECHHHHHHCC------------HHHHHHHHHHHHHHHH----
T ss_conf 99999999851869999-999---------972885432148886055------------7799999999999998----
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 55643222430243100012322000467898876412343332111100000001689996410567775220689872
Q gi|254780271|r 226 QGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIG 305 (424)
Q Consensus 226 ~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~G 305 (424)
T Consensus 240 --------~~kqiv~tsd~---------------------------------------------~P~~l~--~l~~rL~S 264 (447)
T PRK00149 240 --------NNKQIVITSDR---------------------------------------------PPKELE--GLEDRLRS 264 (447)
T ss_pred --------CCCEEEEECCC---------------------------------------------CHHHCC--CCCHHHHH
T ss_conf --------49968995788---------------------------------------------967656--51177886
Q ss_pred CC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 07--84267211105789999874267799999999874498999968999999995510678742368999999677
Q gi|254780271|r 306 RL--PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLD 381 (424)
Q Consensus 306 Rl--PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLed 381 (424)
T Consensus 265 Rf~~Gl~~~i~~Pd~e~r~~Il~~-----------k~~~~~--~~l~~~v~~~iA~~~~~---nvR~LeGal~~l~a~ 326 (447)
T PRK00149 265 RFEWGLTVDIEPPDLETRVAILQK-----------KAEEEG--INLPNEVLEFIAKRIRS---NIRELEGALNRLVAY 326 (447)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHH-----------HHHHCC--CCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHH
T ss_conf 763762651059999999999999-----------999728--99998999999971268---899999999999999