HHsearch alignment for GI: 254780271 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.61 E-value=1.5e-14 Score=122.49 Aligned_cols=226 Identities=24% Similarity=0.384 Sum_probs=137.4
Q ss_pred HHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57422113899134317999999998987421000000269987899999742030859999999999986588752121
Q gi|254780271|r 25 HEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSS 104 (424)
Q Consensus 25 ~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~ 104 (424)
T Consensus 86 ~~~~~l~pg~~V~l~~~~~~i-~~~l~~~~d~~v~-~m~v~e~P~v~~----~dIGGl~~~k~el~E~velPl~~pe-~f 158 (390)
T PRK03992 86 VDRDKLKPGARVALNQQTLAI-VEVLPSEKDPRVR-AMEVIESPDVTY----EDIGGLDEQIREVREAVELPLKNPE-LF 158 (390)
T ss_pred CCHHHCCCCCEEEECCCCCEE-EEECCCCCCCCCC-CCCCCCCCCCCH----HHHCCHHHHHHHHHHHHHHHHHCHH-HH
T ss_conf 688887999989985353030-5646888786211-042147999984----6614989999999999999865989-99
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01355225683588407332176999999987185313101221111110355633035778876542277654223332
Q gi|254780271|r 105 KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 105 ~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
T Consensus 159 ~~~Gi~-pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~s-k~vGes-ek~vr~lF~~Ar----~~aP~IiFi 231 (390)
T PRK03992 159 EEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ-KFIGEG-ARLVRELFELAR----EKAPSIIFI 231 (390)
T ss_pred HHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH-CCCCHH-HHHHHHHHHHHH----HHCCCEEEH
T ss_conf 976999-9972786898999789999999987488879966799752-454179-999999999999----709908971
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
T Consensus 232 DEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~-----------~~~~V~VIaATNrp------------------- 281 (390)
T PRK03992 232 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD-----------PRGNVKIIAATNRP------------------- 281 (390)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----------CCCCEEEEEECCCC-------------------
T ss_conf 432566335677888620889999999999744877-----------77882799606981-------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHH--HCCCCEEEECCCCHHHHHHHHH
Q ss_conf 4333211110000000168999641056777522068987--2078426721110578999987
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFI--GRLPVLATLEDLDENSLIRILS 326 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~--GRlPiiV~L~~Lt~edl~rILt 326 (424)
T Consensus 282 -------------------d~-------------LDpAllRpGRFDr~I~iplPd~~~R~~Ilk 313 (390)
T PRK03992 282 -------------------DI-------------LDPALLRPGRFDRIIEVPLPDEEGRLEILK 313 (390)
T ss_pred -------------------HH-------------CCHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf -------------------00-------------597775477652388708949999999999