HHsearch alignment for GI: 254780271 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=97.65  E-value=7e-05  Score=54.73  Aligned_cols=57  Identities=39%  Similarity=0.582  Sum_probs=37.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-----CCEEEHHHH
Q ss_conf             7420308599999999999865887521210135522568358840733217699999998718-----531310122
Q gi|254780271|r   75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID-----VPFTMADAT  147 (424)
Q Consensus        75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~-----~PF~~vdaT  147 (424)
T Consensus        24 Ldd-IVgQehIVkRLK-----~YVk~~----------smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas   85 (863)
T PRK04132         24 LDE-IVGQDHIVKRLK-----HYVKTG----------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS   85 (863)
T ss_pred             HHH-HCCHHHHHHHHH-----HHHCCC----------CCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             655-227499999999-----886238----------88544304899877144788888876143145556641442