HHsearch alignment for GI: 254780271 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=97.65 E-value=7e-05 Score=54.73 Aligned_cols=57 Identities=39% Similarity=0.582 Sum_probs=37.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-----CCEEEHHHH
Q ss_conf 7420308599999999999865887521210135522568358840733217699999998718-----531310122
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID-----VPFTMADAT 147 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~-----~PF~~vdaT 147 (424)
T Consensus 24 Ldd-IVgQehIVkRLK-----~YVk~~----------smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas 85 (863)
T PRK04132 24 LDE-IVGQDHIVKRLK-----HYVKTG----------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (863)
T ss_pred HHH-HCCHHHHHHHHH-----HHHCCC----------CCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 655-227499999999-----886238----------88544304899877144788888876143145556641442