HHsearch alignment for GI: 254780271 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=99.18  E-value=3.3e-10  Score=92.05  Aligned_cols=120  Identities=28%  Similarity=0.415  Sum_probs=77.4

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf             87899999742030859999999999986588752121013552256835884073321769999999871853131012
Q gi|254780271|r   67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA  146 (424)
Q Consensus        67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda  146 (424)
T Consensus         9 RPk~~~d-----ivg~~~~v~~l~~Wl~-~w~~---------g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNA   73 (403)
T PRK04195          9 RPKSLSD-----VVGNEKAKKQLREWIE-SWLK---------GKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA   73 (403)
T ss_pred             CCCCHHH-----HHCCHHHHHHHHHHHH-HHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             8998999-----8588999999999999-9873---------99657469988939987999999999984998599771


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             21111110355633035778876542--27765422333223332002333333443210256898875310587
Q gi|254780271|r  147 TTLTEAGYVGEDVENIILKLLQAADY--NVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT  219 (424)
Q Consensus       147 T~~TE~GYvG~Dvesii~~L~~~a~~--~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~  219 (424)
T Consensus        74 SD~R~-------~-~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~----------~d~gg~~al~~~ik~s  130 (403)
T PRK04195         74 SDQRT-------K-DVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGN----------ADRGGVRAILEIIKKA  130 (403)
T ss_pred             CCCCC-------H-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCH----------HHHHHHHHHHHHHHCC
T ss_conf             01147-------8-99999999876068877887349996343445724----------4479999999998548