HHsearch alignment for GI: 254780271 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.18 E-value=3.3e-10 Score=92.05 Aligned_cols=120 Identities=28% Similarity=0.415 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853131012
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
T Consensus 9 RPk~~~d-----ivg~~~~v~~l~~Wl~-~w~~---------g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNA 73 (403)
T PRK04195 9 RPKSLSD-----VVGNEKAKKQLREWIE-SWLK---------GKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 73 (403)
T ss_pred CCCCHHH-----HHCCHHHHHHHHHHHH-HHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 8998999-----8588999999999999-9873---------99657469988939987999999999984998599771
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 21111110355633035778876542--27765422333223332002333333443210256898875310587
Q gi|254780271|r 147 TTLTEAGYVGEDVENIILKLLQAADY--NVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 147 T~~TE~GYvG~Dvesii~~L~~~a~~--~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 74 SD~R~-------~-~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~----------~d~gg~~al~~~ik~s 130 (403)
T PRK04195 74 SDQRT-------K-DVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGN----------ADRGGVRAILEIIKKA 130 (403)
T ss_pred CCCCC-------H-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCH----------HHHHHHHHHHHHHHCC
T ss_conf 01147-------8-99999999876068877887349996343445724----------4479999999998548