HHsearch alignment for GI: 254780271 and conserved domain: PRK05022

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.16  E-value=3.6e-10  Score=91.76  Aligned_cols=219  Identities=20%  Similarity=0.314  Sum_probs=137.5

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH-
Q ss_conf             203085999999999998658875212101355225683588407332176999999987---1853131012211111-
Q gi|254780271|r   77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA-  152 (424)
Q Consensus        77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~-  152 (424)
T Consensus       186 ~elIG~S~~m~~l----~~~i~~vA---------~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l  252 (510)
T PRK05022        186 GEMIGQSPAMQQL----KKEIEVVA---------ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL  252 (510)
T ss_pred             CCEEECCHHHHHH----HHHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH
T ss_conf             9752089999999----99999996---------8999889889898139999999996688789985788899998567


Q ss_pred             ------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             ------10355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r  153 ------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ  226 (424)
Q Consensus       153 ------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~  226 (424)
T Consensus       253 ~EseLFGh~kGaFtG----A~~~r~G~fe~A~gGTLfLDEI~~Lpl~--------------~Q~KLLrvLq~g~i--qrv  312 (510)
T PRK05022        253 AESELFGHVKGAFTG----AISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEI--QRV  312 (510)
T ss_pred             HHHHHCCCCCCCCCC----CCCCCCCCEEECCCCEEEEECHHHCCHH--------------HHHHHHHHHHCCEE--EEC
T ss_conf             899865977788688----6556788101778987987574549999--------------99999999847958--855


Q ss_pred             CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf             56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r  227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR  306 (424)
Q Consensus       227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR  306 (424)
T Consensus       313 G~~~~~~vdvRIIAATnr---------dL~~~---------------------------V~~G--------~FR~DLYyR  348 (510)
T PRK05022        313 GSDRSLRVDVRVIAATNR---------DLREE---------------------------VLAG--------RFRADLYHR  348 (510)
T ss_pred             CCCCEEEEEEEEEEECCC---------CHHHH---------------------------HHCC--------CHHHHHHHH
T ss_conf             899466666899960783---------59999---------------------------8839--------638999987


Q ss_pred             CCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             7842-67211105--78999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r  307 LPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL  380 (424)
Q Consensus       307 lPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe  380 (424)
T Consensus       349 Lsv~~I~vPPLRER~eDI~lLa----~~FLe~~~~~~g~~--~~~ls~eAl~~L~~Y~WPGNV--RELenvIeRA~l  417 (510)
T PRK05022        349 LSVFPLPVPPLRERGDDVLLLA----GYFLEQNRLRLGLS--SLRLSPDAQAALLQYDWPGNV--RELEHVISRAAL  417 (510)
T ss_pred             HHCCCCCCCCHHHCHHHHHHHH----HHHHHHHHHHCCCC--CCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf             6204034808655554099999----99999999982989--898889999999709999789--999999999999