HHsearch alignment for GI: 254780271 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=97.93 E-value=1.8e-05 Score=58.92 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHC-----CC----CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 568358840733217699999998718---53131012211111103-----55----6330357788765422776542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID---VPFTMADATTLTEAGYV-----GE----DVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~---~PF~~vdaT~~TE~GYv-----G~----Dvesii~~L~~~a~~~v~~a~~ 179 (424)
T Consensus 18 l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id-~iR~l~~~i~~~p~~g~~ 96 (290)
T PRK05917 18 VPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIE-TPRAIKKQIWIHPYEANY 96 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHH-HHHHHHHHHCCCCCCCCC
T ss_conf 6606876899986599999999999857899616889874689985996157778878678-999999996418646882
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333223332002333333443210256898875310587
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 97 KV~IId~Ad~Mn~--------------~AaNALLKtLEEP 122 (290)
T PRK05917 97 KIYIIHEADRMTL--------------DAISAFLKVLEDP 122 (290)
T ss_pred EEEEECCHHHHCH--------------HHHHHHHHHHCCC
T ss_conf 6999756776389--------------9999999973479