HHsearch alignment for GI: 254780271 and conserved domain: PRK07132
>PRK07132 DNA polymerase III subunit delta'; Validated.
Probab=97.43 E-value=0.00016 Score=52.24 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEE-HHHHHHH-HHHH---CCCC--CCCHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871853131-0122111-1110---3556--3303577887654-2277654223332
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTM-ADATTLT-EAGY---VGED--VENIILKLLQAAD-YNVERAQRGIVYI 184 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~-vdaT~~T-E~GY---vG~D--vesii~~L~~~a~-~~v~~a~~~iv~i 184 (424)
T Consensus 20 sHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~-i~~~i~~~~~~~~~~~~~Kv~II 98 (303)
T PRK07132 20 SHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEE-FLSAIEKFSFSSFVSNQKKILII 98 (303)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH-HHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 61688678998679999999999972998788875456532304133222001688-99999999736655687069998
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 233320023333334432102568988753105870
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
T Consensus 99 dea~~lt~~--------------A~NaLLKtLEEPp 120 (303)
T PRK07132 99 KNIEKTSNS--------------SLNALLKTIEEPS 120 (303)
T ss_pred ECHHHCCHH--------------HHHHHHHHCCCCC
T ss_conf 165533999--------------9999998703898