HHsearch alignment for GI: 254780271 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.05 E-value=6.8e-05 Score=54.85 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=102.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871853131012211111
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA 152 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~ 152 (424)
T Consensus 19 ~tfdnFi~g~n~~---~~~al~~~~~~--~~----~-----~~l~l~G~~G~GKTHLLqA~~~~~~~~---~~-----~~ 76 (235)
T PRK08084 19 ETFASFYPGDNDS---LLAALQNVLRQ--EH----S-----GYIYLWGREGAGRSHLLHAACAELSQR---GD-----AV 76 (235)
T ss_pred CCHHCCCCCCCHH---HHHHHHHHHHC--CC----C-----CEEEEECCCCCCHHHHHHHHHHHHHCC---CC-----CE
T ss_conf 6630234488699---99999999857--89----8-----769998999988899999999999707---98-----57
Q ss_pred HHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 1035563-303577887654227765422333223332002333333443210256898875310587010256556432
Q gi|254780271|r 153 GYVGEDV-ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231 (424)
Q Consensus 153 GYvG~Dv-esii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~ 231 (424)
T Consensus 77 ~yl~~~~~~~~~~~~l~~------l~~~dll~iDDi~~i~g~~--------~~ee~lF~l~N~~~~~------------- 129 (235)
T PRK08084 77 GYVPLDKRAWFVPEVLEG------MEQLSLVCIDNIECIAGDE--------LWEMAIFDLYNRILES------------- 129 (235)
T ss_pred EEEEHHHHHHHHHHHHHH------HHHCCEEEEECHHHHCCCH--------HHHHHHHHHHHHHHHH-------------
T ss_conf 998779866517999987------6418989982745546997--------8999999999999984-------------
Q ss_pred CCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC--CC
Q ss_conf 2243024310001232200046789887641234333211110000000168999641056777522068987207--84
Q gi|254780271|r 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL--PV 309 (424)
Q Consensus 232 ~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl--Pi 309 (424)
T Consensus 130 --g~~~ll~ts~~~---------------------------------------------P~~l~--~~l~DL~SRl~~g~ 160 (235)
T PRK08084 130 --GKTRLLITGDRP---------------------------------------------PRQLN--LGLPDLASRLDWGQ 160 (235)
T ss_pred --CCCEEEEECCCC---------------------------------------------HHHCC--CCCHHHHHHHHCCC
T ss_conf --896699967988---------------------------------------------24302--31288999995697
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 26721110578999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r 310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 310 iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
T Consensus 161 ~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~-R--~~~~L~~~l~~Ld~ 215 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLD-R--EMRTLFMTLDQLDK 215 (235)
T ss_pred EEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C--CHHHHHHHHHHHHH
T ss_conf 278559998999999999-----------9997399--999899999998615-8--89999999999999