HHsearch alignment for GI: 254780271 and conserved domain: PRK08116
>PRK08116 hypothetical protein; Validated.
Probab=98.40 E-value=4.9e-06 Score=62.84 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=92.9
Q ss_pred CCEEEECCCCCCHHHHHCCCCCCC---CEECH-HHHH-HHHHHHHHHHHHHCCHH----C-CCCCCHHHHHHHHHHHCC-
Q ss_conf 672561689888657422113899---13431-7999-99999898742100000----0-269987899999742030-
Q gi|254780271|r 12 KNALYCSFCGKSQHEVRKLIAGPT---VFICD-ECVE-LCMDIIREENKSSITKS----H-EGIPNPQEILRVLDEYVI- 80 (424)
Q Consensus 12 ~~~~~CsfCg~~~~~v~~li~g~~---~~iC~-~Ci~-~~~~i~~~e~~~~~~~~----~-~~~~tP~eI~~~Ld~yVI- 80 (424)
T Consensus 5 ~~~~~c~~Cg~~~~~~~~~~~~~g~~~~~~~~C~C~~~~~~~~~~~~~~~~~q~ri~rl~~~s~i~~~f~~~tFeN~~~~ 84 (262)
T PRK08116 5 EEGYYCEVCGKCIEAITVEVPQLGRKRKIPPMCECKREREEAKIEEEENKEKQLRLERLISNSLLDEKFRNSTFENWLFR 84 (262)
T ss_pred CCCEECCCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
T ss_conf 48814788898689738986356466457978878399999999999999999999999986599988981922255689
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHH---HH
Q ss_conf -859999999999986588752121013552256835884073321769999999871---85313101221111---11
Q gi|254780271|r 81 -GQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTE---AG 153 (424)
Q Consensus 81 -GQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE---~G 153 (424)
T Consensus 85 ~~~~~a~~-~a~~Y~~~f~~~~------~---~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~ 154 (262)
T PRK08116 85 KGSEKAYK-VAVKYVKKFEEMK------K---ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKST 154 (262)
T ss_pred CCHHHHHH-HHHHHHHHHHHHC------C---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf 52599999-9999999898736------4---686189989899989999999999999879939998899999999999
Q ss_pred HCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 0355--633-0357788765422776542233322333200233333344321025689887531058701025655643
Q gi|254780271|r 154 YVGE--DVE-NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRK 230 (424)
Q Consensus 154 YvG~--Dve-sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk 230 (424)
T Consensus 155 ~~~~~~~~~~e~l~~l~----------~~dLLIiDDlG~e------------~~t~w~~e~lf~IIn~Ry~~-------- 204 (262)
T PRK08116 155 YNSEGKEDENEIIRALD----------NADLLILDDLGAE------------KDTEWVREKLYNIIDSRYRK-------- 204 (262)
T ss_pred HHCCCCHHHHHHHHHHH----------CCCEEEEEHHCCC------------CCCHHHHHHHHHHHHHHHHC--------
T ss_conf 86356101999999861----------2998998322145------------69878999999999999976--------
Q ss_pred CCCCCEEEEECCHHH
Q ss_conf 222430243100012
Q gi|254780271|r 231 HPQQEFLQVDTTNIL 245 (424)
Q Consensus 231 ~~~~~~~~Idt~nil 245 (424)
T Consensus 205 ----~kptIiTTNl~ 215 (262)
T PRK08116 205 ----GLPTIFTTNLS 215 (262)
T ss_pred ----CCCEEEECCCC
T ss_conf ----99989987999