HHsearch alignment for GI: 254780271 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=97.62 E-value=7.6e-05 Score=54.51 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=39.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 358840733217699999998718531310122111111035563303
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-l~w~~~w~~~~~~e~ 49 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFWKPNWEGVPKEEQ 49 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-EEECCCCCCCCHHHH
T ss_conf 79998899987999999999988969796443-476689946888999