HHsearch alignment for GI: 254780271 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.61 E-value=5.3e-05 Score=55.59 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871-----8531310122111111035563303577887654227765422333223
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~--~~L~~~L~~a~~~~~-~~~~~------~~l~~~dLLIiDe 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT--TDLVQKLQVARRELQ-LESAI------AKLDKFDLLILDD 175 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHHHHHHHHHHHCCC-HHHHH------HHHHCCCEEEEHH
T ss_conf 48708998999987889999999999987993999789--999999999775583-99999------9974446012201
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 332002333333443210256898875310587010256556432224302431000123
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilf 246 (424)
T Consensus 176 ~G~~~------------~~~~~~~~lf~lI~~Ry-------------e~~S~IITSn~~~ 210 (269)
T PRK08181 176 LAYVT------------KDQAETSVLFELISARY-------------ERRSILITANQPF 210 (269)
T ss_pred CCCCC------------CCHHHHHHHHHHHHHHH-------------CCCCEEEECCCCH
T ss_conf 05667------------99899999999999985-------------7888899889997