HHsearch alignment for GI: 254780271 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.65 E-value=3.7e-05 Score=56.70 Aligned_cols=96 Identities=26% Similarity=0.365 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHH----H--HHHH
Q ss_conf 56835884073321769999999871-----853131012211111103556330357788765-4227----7--6542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAA-DYNV----E--RAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a-~~~v----~--~a~~ 179 (424)
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~--~~~-------------L~~~L~~a~~~~~~~~~l~r~l~~~ 164 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--AAD-------------LLLQLSTAQRQGRYKTTLQRGVMAP 164 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--HHH-------------HHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 5886799899998689999999999998799399978--999-------------9999999987685999999874346
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 23332233320023333334432102568988753105870102565564322243024310001232
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFI 247 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi 247 (424)
T Consensus 165 dLLIiDdlG~~~------------~~~~~~~~lfeli~~Rye-------------~~S~IiTSn~~~~ 207 (258)
T PRK09183 165 RLLIIDEIGYLP------------FSQEEANLFFQVIAKRYE-------------KGAMILTSNLPFG 207 (258)
T ss_pred CEEEEHHHHCCC------------CCHHHHHHHHHHHHHHHC-------------CCCEEEECCCCHH
T ss_conf 514431331546------------888899999999999857-------------6778998899978