HHsearch alignment for GI: 254780271 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=97.65  E-value=3.7e-05  Score=56.70  Aligned_cols=96  Identities=26%  Similarity=0.365  Sum_probs=53.3

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHH----H--HHHH
Q ss_conf             56835884073321769999999871-----853131012211111103556330357788765-4227----7--6542
Q gi|254780271|r  112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAA-DYNV----E--RAQR  179 (424)
Q Consensus       112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a-~~~v----~--~a~~  179 (424)
T Consensus       100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~--~~~-------------L~~~L~~a~~~~~~~~~l~r~l~~~  164 (258)
T PRK09183        100 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--AAD-------------LLLQLSTAQRQGRYKTTLQRGVMAP  164 (258)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--HHH-------------HHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             5886799899998689999999999998799399978--999-------------9999999987685999999874346


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf             23332233320023333334432102568988753105870102565564322243024310001232
Q gi|254780271|r  180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFI  247 (424)
Q Consensus       180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi  247 (424)
T Consensus       165 dLLIiDdlG~~~------------~~~~~~~~lfeli~~Rye-------------~~S~IiTSn~~~~  207 (258)
T PRK09183        165 RLLIIDEIGYLP------------FSQEEANLFFQVIAKRYE-------------KGAMILTSNLPFG  207 (258)
T ss_pred             CEEEEHHHHCCC------------CCHHHHHHHHHHHHHHHC-------------CCCEEEECCCCHH
T ss_conf             514431331546------------888899999999999857-------------6778998899978