HHsearch alignment for GI: 254780271 and conserved domain: PRK09862

>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.26  E-value=1.3e-10  Score=94.81  Aligned_cols=300  Identities=16%  Similarity=0.209  Sum_probs=158.3

Q ss_pred             CEEEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             72561689888657422113899134317999999998987421000000269987899999742030859999999999
Q gi|254780271|r   13 NALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVA   92 (424)
Q Consensus        13 ~~~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvA   92 (424)
T Consensus       134 ~~~ivp~~n~~e---a~~v~~~~v~~~~~L~e~~~-~l~g~~~~~~-~~~~~~~~~~~~~D~~--dv~Gq~~akraleIA  206 (506)
T PRK09862        134 RKIIVAKDNEDE---VGLINGEGCLIADHLQAVCA-FLEGKHALER-PKPTDAVSRALQHDLS--DVVGQEQGKRGLEIT  206 (506)
T ss_pred             CEEEECCCCHHH---HCCCCCCCEECCCCHHHHHH-HHCCCCCCCC-CCCCCCCCCCCCCCHH--HHCCCHHHHHHHHHH
T ss_conf             989953464566---50569982870325999999-8659876788-8866556876656756--536979999999997


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH---HHHHHHH-HHHCCCCC--C------
Q ss_conf             9865887521210135522568358840733217699999998718531310---1221111-11035563--3------
Q gi|254780271|r   93 VHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA---DATTLTE-AGYVGEDV--E------  160 (424)
Q Consensus        93 v~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v---daT~~TE-~GYvG~Dv--e------  160 (424)
T Consensus       207 A-----------------AGgHnlLl~GpPG~GKTMlA~rlp~ILP-pLt~~e~lEv~~I~Svag~~~~~~~~~~rPfR~  268 (506)
T PRK09862        207 A-----------------AGGHNLLLIGPPGTGKTMLASRINGLLP-DLSNEEALESAAILSLVNAESVQKQWRQRPFRS  268 (506)
T ss_pred             H-----------------CCCCCEEEECCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEC
T ss_conf             4-----------------4688659876999459899977512389-989899999999998718987777546685037


Q ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf             --------035778876542277654223332233320023333334432102568988753105870102565564322
Q gi|254780271|r  161 --------NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP  232 (424)
Q Consensus       161 --------sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~  232 (424)
T Consensus       269 PHHs~S~~aliGGG~~~~PGEISLAH~GVLFLDElpEF~r--------------~vLe~LRqPLE~g~I~IsRa~~~~~~  334 (506)
T PRK09862        269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER--------------RTLDALREPIESGQIHLSRTRAKITY  334 (506)
T ss_pred             CCCCCCHHHHHCCCCCCCCCCEEECCCCEEEECCHHCCCH--------------HHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf             8876547666379999999722213575788455000688--------------89998776224775999966867986


Q ss_pred             CCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEE
Q ss_conf             24302431000123220004678988764123433321111000000016899964105677752206898720784267
Q gi|254780271|r  233 QQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLAT  312 (424)
Q Consensus       233 ~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~  312 (424)
T Consensus       335 PA~F~LVaAmNP-CPCG-~~~------------------~~~~~Ct~~~~~rY~~r----------lSGPllDRiDl~v~  384 (506)
T PRK09862        335 PARFQLVAAMNP-SPTG-HYQ------------------GNHNRCTPEQTLRYLNR----------LSGPFLDRFDLSLE  384 (506)
T ss_pred             CCHHHHEHHCCC-CCCC-CCC------------------CCCCCCCHHHHHHHHHH----------CCHHHHHCEEEEEE
T ss_conf             153311110378-8888-899------------------99777898999999865----------66221303647998


Q ss_pred             ECCCCHHHHHHHHH--H--------HHHHHHHHHHHHHHHCCC---------EEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             21110578999987--4--------267799999999874498---------9999689999999955106787423689
Q gi|254780271|r  313 LEDLDENSLIRILS--E--------PKNALIKQYQCLFDMEDV---------ELVFHEDALREIARCAIAHKTGARGLRS  373 (424)
Q Consensus       313 L~~Lt~edl~rILt--e--------pknsLikQy~~Ll~~egV---------~L~FtdeAi~~IA~~A~~~niGAR~Lrt  373 (424)
T Consensus       385 v~~~~~~~l~~~~~~~esS~~ir~rV~~Ar~~q~~R~-~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~r  463 (506)
T PRK09862        385 IPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQR  463 (506)
T ss_pred             CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             1689966663248989888999999999999999855-165657998999765499978999999999965957999999


Q ss_pred             HH--HHHHHHH
Q ss_conf             99--9996777
Q gi|254780271|r  374 IL--EKILLDT  382 (424)
Q Consensus       374 Ii--E~iLedi  382 (424)
T Consensus       464 iLrvARTIADL  474 (506)
T PRK09862        464 LLKVARTIADI  474 (506)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999855