HHsearch alignment for GI: 254780271 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.26 E-value=1.3e-10 Score=94.81 Aligned_cols=300 Identities=16% Similarity=0.209 Sum_probs=158.3
Q ss_pred CEEEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 72561689888657422113899134317999999998987421000000269987899999742030859999999999
Q gi|254780271|r 13 NALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVA 92 (424)
Q Consensus 13 ~~~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvA 92 (424)
T Consensus 134 ~~~ivp~~n~~e---a~~v~~~~v~~~~~L~e~~~-~l~g~~~~~~-~~~~~~~~~~~~~D~~--dv~Gq~~akraleIA 206 (506)
T PRK09862 134 RKIIVAKDNEDE---VGLINGEGCLIADHLQAVCA-FLEGKHALER-PKPTDAVSRALQHDLS--DVVGQEQGKRGLEIT 206 (506)
T ss_pred CEEEECCCCHHH---HCCCCCCCEECCCCHHHHHH-HHCCCCCCCC-CCCCCCCCCCCCCCHH--HHCCCHHHHHHHHHH
T ss_conf 989953464566---50569982870325999999-8659876788-8866556876656756--536979999999997
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH---HHHHHHH-HHHCCCCC--C------
Q ss_conf 9865887521210135522568358840733217699999998718531310---1221111-11035563--3------
Q gi|254780271|r 93 VHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA---DATTLTE-AGYVGEDV--E------ 160 (424)
Q Consensus 93 v~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v---daT~~TE-~GYvG~Dv--e------ 160 (424)
T Consensus 207 A-----------------AGgHnlLl~GpPG~GKTMlA~rlp~ILP-pLt~~e~lEv~~I~Svag~~~~~~~~~~rPfR~ 268 (506)
T PRK09862 207 A-----------------AGGHNLLLIGPPGTGKTMLASRINGLLP-DLSNEEALESAAILSLVNAESVQKQWRQRPFRS 268 (506)
T ss_pred H-----------------CCCCCEEEECCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEC
T ss_conf 4-----------------4688659876999459899977512389-989899999999998718987777546685037
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf --------035778876542277654223332233320023333334432102568988753105870102565564322
Q gi|254780271|r 161 --------NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP 232 (424)
Q Consensus 161 --------sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~ 232 (424)
T Consensus 269 PHHs~S~~aliGGG~~~~PGEISLAH~GVLFLDElpEF~r--------------~vLe~LRqPLE~g~I~IsRa~~~~~~ 334 (506)
T PRK09862 269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER--------------RTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred CCCCCCHHHHHCCCCCCCCCCEEECCCCEEEECCHHCCCH--------------HHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf 8876547666379999999722213575788455000688--------------89998776224775999966867986
Q ss_pred CCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEE
Q ss_conf 24302431000123220004678988764123433321111000000016899964105677752206898720784267
Q gi|254780271|r 233 QQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLAT 312 (424)
Q Consensus 233 ~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~ 312 (424)
T Consensus 335 PA~F~LVaAmNP-CPCG-~~~------------------~~~~~Ct~~~~~rY~~r----------lSGPllDRiDl~v~ 384 (506)
T PRK09862 335 PARFQLVAAMNP-SPTG-HYQ------------------GNHNRCTPEQTLRYLNR----------LSGPFLDRFDLSLE 384 (506)
T ss_pred CCHHHHEHHCCC-CCCC-CCC------------------CCCCCCCHHHHHHHHHH----------CCHHHHHCEEEEEE
T ss_conf 153311110378-8888-899------------------99777898999999865----------66221303647998
Q ss_pred ECCCCHHHHHHHHH--H--------HHHHHHHHHHHHHHHCCC---------EEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 21110578999987--4--------267799999999874498---------9999689999999955106787423689
Q gi|254780271|r 313 LEDLDENSLIRILS--E--------PKNALIKQYQCLFDMEDV---------ELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 313 L~~Lt~edl~rILt--e--------pknsLikQy~~Ll~~egV---------~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
T Consensus 385 v~~~~~~~l~~~~~~~esS~~ir~rV~~Ar~~q~~R~-~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~r 463 (506)
T PRK09862 385 IPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQR 463 (506)
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 1689966663248989888999999999999999855-165657998999765499978999999999965957999999
Q ss_pred HH--HHHHHHH
Q ss_conf 99--9996777
Q gi|254780271|r 374 IL--EKILLDT 382 (424)
Q Consensus 374 Ii--E~iLedi 382 (424)
T Consensus 464 iLrvARTIADL 474 (506)
T PRK09862 464 LLKVARTIADI 474 (506)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999855