HHsearch alignment for GI: 254780271 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=99.11 E-value=5.8e-10 Score=90.30 Aligned_cols=198 Identities=16% Similarity=0.263 Sum_probs=125.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---18531310122111111----0355633035778876542277654223332
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEAG----YVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~G----YvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaft-ga~~~~~g~~~~A~gGTLfL 239 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFT-GADKRREGRFVEADGGTLFL 239 (441)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCEEECCCCEECC
T ss_conf 89948998999810999999999657877898079878989845558986177556878-96534689877889982550
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
T Consensus 240 deI~~l~~~--------------~Q~kLl~~l~~~~~~--~~g~~~~~~~d~RiIaat~~---------~l--------- 285 (441)
T PRK10365 240 DEIGDISPM--------------MQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHR---------DL--------- 285 (441)
T ss_pred CCCCCCCHH--------------HHHHHHHHHHHHHHC--CCCCCCEEECCCEEEECCCC---------CH---------
T ss_conf 231529999--------------999999877752100--05887344136379983788---------99---------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHCCC-CEEEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 433321111000000016899964105677752-20689872078-4267211105--7899998742677999999998
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVKF-GLIPEFIGRLP-VLATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~-gliPEl~GRlP-iiV~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
T Consensus 286 ---------------------------~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~~~ 334 (441)
T PRK10365 286 ---------------------------AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAERN 334 (441)
T ss_pred ---------------------------HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHC
T ss_conf ---------------------------99988198258999886011137826000620099999----99999999984
Q ss_pred HHCCCEE-EECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7449899-996899999999551067874236899999967
Q gi|254780271|r 341 DMEDVEL-VFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 341 ~~egV~L-~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
T Consensus 335 ---~~~~~~~s~~a~~~L~~y~WPGNv--REL~n~iera~~ 370 (441)
T PRK10365 335 ---RKAVKGFTPQAMDLLIHYDWPGNI--RELENAVERAVV 370 (441)
T ss_pred ---CCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf ---999888899999999709999899--999999999999