HHsearch alignment for GI: 254780271 and conserved domain: PRK10923
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional.
Probab=99.15 E-value=7.5e-10 Score=89.53 Aligned_cols=198 Identities=19% Similarity=0.285 Sum_probs=130.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---1853131012211111----10355633035778876542277654223332
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
T Consensus 160 ~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf-~ga~~~~~g~~e~a~~GTLfL 238 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF-TGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHCCCCCEEH
T ss_conf 8997899898982699999999974887799957876788997789999708766787-886424587366438992656
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
T Consensus 239 deI~~L~~~--------------~Q~kLl~~L~~~~~~--~~g~~~~~~~d~RiIaat~~~------------------- 283 (469)
T PRK10923 239 DEIGDMPLD--------------VQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQN------------------- 283 (469)
T ss_pred HHHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCCEEEECCEEEEECCCC-------------------
T ss_conf 636648999--------------999999998559378--579985122143799707879-------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCC-EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43332111100000001689996410567775-2206898720784-267211105--7899998742677999999998
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPV-LATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPi-iV~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
T Consensus 284 --------------------------L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~----~~fl~~~~~~~ 333 (469)
T PRK10923 284 --------------------------LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAREL 333 (469)
T ss_pred --------------------------HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH----HHHHHHHHHHC
T ss_conf --------------------------999866081779999864424015846544653499999----99999999985
Q ss_pred HHCCC-EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 74498-99996899999999551067874236899999967
Q gi|254780271|r 341 DMEDV-ELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 341 ~~egV-~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
T Consensus 334 ---~~~~~~~s~~a~~~L~~y~WPGNv--rEL~n~ier~~~ 369 (469)
T PRK10923 334 ---GVEAKLLHPETEAALTRLAWPGNV--RQLENTCRWLTV 369 (469)
T ss_pred ---CCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf ---999787899999999749999879--999999999998