HHsearch alignment for GI: 254780271 and conserved domain: PRK11034

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=100.00  E-value=0  Score=346.20  Aligned_cols=295  Identities=23%  Similarity=0.344  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf             78999997420308599999999999865887521210135522568358840733217699999998718531310122
Q gi|254780271|r   68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADAT  147 (424)
Q Consensus        68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT  147 (424)
T Consensus       449 l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~----~~~rPi--gsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS  522 (758)
T PRK11034        449 LKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLG----HEHKPV--GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS  522 (758)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC----CCCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9989999877874549999999999999863888----999970--5899978998777999999999986677214266


Q ss_pred             HHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             11111-----------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r  148 TLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM  216 (424)
Q Consensus       148 ~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil  216 (424)
T Consensus       523 Ey~e~hsvsrLiGaPPGYVGy~eGG~L-------te~Vr~~PysVvL~DEIEKAhpd--------------V~nilLQvl  581 (758)
T PRK11034        523 EYMERHTVSRLIGAPPGYVGFDQGGLL-------TDAVIKHPHAVLLLDEIEKAHPD--------------VFNLLLQVM  581 (758)
T ss_pred             HHCCHHHHHHHCCCCCCCCCCCCCCCC-------CHHHHHCCCEEEEEHHHHHHCHH--------------HHHHHHHHC
T ss_conf             531201477744899866676777701-------28787398779973367563989--------------999887323


Q ss_pred             CCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             58701025655643222430243100012322000467898876412343332111100000001689996410567775
Q gi|254780271|r  217 EGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVK  296 (424)
Q Consensus       217 eg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~  296 (424)
T Consensus       582 D~G--~LtD~~Gr~vdF~NtiIImTSN~-----Ga~~---------~~~~~~gf~~~~~~~------~~~------~~l~  633 (758)
T PRK11034        582 DNG--TLTDNNGRKADFRNVVLVMTTNA-----GVRE---------TERKSIGLIHQDNST------DAM------EEIK  633 (758)
T ss_pred             CCC--CCCCCCCCEEECEEEEEEEECCC-----CHHH---------HHHHCCCCCCCCCHH------HHH------HHHH
T ss_conf             778--30179999884400199982561-----7487---------864214755420359------999------9999


Q ss_pred             HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             22068987207842672111057899998742677999999998744989999689999999955106787423689999
Q gi|254780271|r  297 FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILE  376 (424)
Q Consensus       297 ~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE  376 (424)
T Consensus       634 ~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~  709 (758)
T PRK11034        634 KIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ  709 (758)
T ss_pred             HHCCHHHHHHCCEEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             547986772367478638899999999999----9999999999978985998899999999848894537112889999


Q ss_pred             HHHHHHHHCCCC---CCCCCEEEECHHHHCCCCCEEEEECCCCHHHHHHC
Q ss_conf             996777402767---89841999837785587881687256511455531
Q gi|254780271|r  377 KILLDTMFELPM---LKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS  423 (424)
Q Consensus       377 ~iLedimFe~P~---~~~~~~v~Id~~~V~~~~~p~~~~~~~~~~~~~~s  423 (424)
T Consensus       710 ~~i~~~La~~il~g~~~~g~~v~v~~~--~~~~~l~f~~~~~~~~~~~~~  757 (758)
T PRK11034        710 DNLKKPLANELLFGSLVDGGQVTVALD--KEKNELTYGFQSAQKHKAEAA  757 (758)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEE--CCCCEEEEEEECCCCCCHHHC
T ss_conf             998899999997298889898999997--899879999605775202214