HHsearch alignment for GI: 254780271 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=97.48 E-value=8.6e-05 Score=54.12 Aligned_cols=94 Identities=28% Similarity=0.441 Sum_probs=57.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHHHHH--------HHC----CC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871853--131012211111--------103----55-6330357788765422776
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTLTEA--------GYV----GE-DVENIILKLLQAADYNVER 176 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~TE~--------GYv----G~-Dvesii~~L~~~a~~~v~~ 176 (424)
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~- 271 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE- 271 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCC-
T ss_conf 5882796589998878999999999707887784689983588661787646056888613268369999999984989-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 54223332233320023333334432102568988753105870
Q gi|254780271|r 177 AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 177 a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
T Consensus 272 -~~y~~iideinr~~~~-------------~~fgel~~liE~dk 301 (459)
T PRK11331 272 -KKYVFIIDEINRANLS-------------KVFGEVMMLMEHDK 301 (459)
T ss_pred -CCEEEEEEHHHCCCHH-------------HHHHHHHHHHHHCC
T ss_conf -8769998432033889-------------99999999964125