HHsearch alignment for GI: 254780271 and conserved domain: PRK11388

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=99.19  E-value=1.3e-10  Score=94.85  Aligned_cols=194  Identities=22%  Similarity=0.333  Sum_probs=123.9

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHH---HHCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68358840733217699999998---71853131012211111----103556330357788765422776542233322
Q gi|254780271|r  113 KSNILLVGPTGCGKTYLAQTLAR---IIDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYID  185 (424)
Q Consensus       113 ~~NILliGPTGvGKTelAr~LAk---~l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD  185 (424)
T Consensus       348 ~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~~~~~----~~~g~~g~~e~A~gGTL~Ld  423 (639)
T PRK11388        348 SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLE  423 (639)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHCCCCCEEEEC
T ss_conf             99689889898109999999995577789981898789898467899873877676----43466862440369828846


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf             33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r  186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK  265 (424)
Q Consensus       186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~  265 (424)
T Consensus       424 eI~~lp~~--------------~Q~~LlrvL~~~~~~--r~g~~~~~~vdvRiiaat~~---------~l----------  468 (639)
T PRK11388        424 KVEYLSVE--------------LQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTA---------DL----------  468 (639)
T ss_pred             CHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCCEEEEEEEEEEECCH---------HH----------
T ss_conf             72649999--------------999999998659378--56999466642799973645---------08----------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCC-EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3332111100000001689996410567775-2206898720784-267211105--78999987426779999999987
Q gi|254780271|r  266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPV-LATLEDLDE--NSLIRILSEPKNALIKQYQCLFD  341 (424)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPi-iV~L~~Lt~--edl~rILtepknsLikQy~~Ll~  341 (424)
T Consensus       469 --------------------------~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~----~~~l~~~~~~~-  517 (639)
T PRK11388        469 --------------------------AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV----NNKLRSLEKRF-  517 (639)
T ss_pred             --------------------------HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHH----HHHHHHHHHHC-
T ss_conf             --------------------------99987498549999876744105733232534399999----99999999971-


Q ss_pred             HCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             449899996899999999551067874236899999967
Q gi|254780271|r  342 MEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL  380 (424)
Q Consensus       342 ~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe  380 (424)
T Consensus       518 --~~~~~ls~~a~~~L~~y~WPGNv--rEL~nvl~~a~~  552 (639)
T PRK11388        518 --STRLKIDDDALARLVSYRWPGND--FELRSVIENLAL  552 (639)
T ss_pred             --CCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf             --99999899999999728999799--999999999998