HHsearch alignment for GI: 254780271 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=99.19 E-value=1.3e-10 Score=94.85 Aligned_cols=194 Identities=22% Similarity=0.333 Sum_probs=123.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH---HHCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68358840733217699999998---71853131012211111----103556330357788765422776542233322
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLAR---IIDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk---~l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
T Consensus 348 ~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~~~~~----~~~g~~g~~e~A~gGTL~Ld 423 (639)
T PRK11388 348 SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLE 423 (639)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHCCCCCEEEEC
T ss_conf 99689889898109999999995577789981898789898467899873877676----43466862440369828846
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
T Consensus 424 eI~~lp~~--------------~Q~~LlrvL~~~~~~--r~g~~~~~~vdvRiiaat~~---------~l---------- 468 (639)
T PRK11388 424 KVEYLSVE--------------LQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTA---------DL---------- 468 (639)
T ss_pred CHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCCEEEEEEEEEEECCH---------HH----------
T ss_conf 72649999--------------999999998659378--56999466642799973645---------08----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCC-EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3332111100000001689996410567775-2206898720784-267211105--78999987426779999999987
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPV-LATLEDLDE--NSLIRILSEPKNALIKQYQCLFD 341 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPi-iV~L~~Lt~--edl~rILtepknsLikQy~~Ll~ 341 (424)
T Consensus 469 --------------------------~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~----~~~l~~~~~~~- 517 (639)
T PRK11388 469 --------------------------AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV----NNKLRSLEKRF- 517 (639)
T ss_pred --------------------------HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHH----HHHHHHHHHHC-
T ss_conf --------------------------99987498549999876744105733232534399999----99999999971-
Q ss_pred HCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 449899996899999999551067874236899999967
Q gi|254780271|r 342 MEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 342 ~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
T Consensus 518 --~~~~~ls~~a~~~L~~y~WPGNv--rEL~nvl~~a~~ 552 (639)
T PRK11388 518 --STRLKIDDDALARLVSYRWPGND--FELRSVIENLAL 552 (639)
T ss_pred --CCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf --99999899999999728999799--999999999998