HHsearch alignment for GI: 254780271 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=99.23 E-value=1.8e-10 Score=93.95 Aligned_cols=220 Identities=21% Similarity=0.304 Sum_probs=137.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH--
Q ss_conf 030859999999999986588752121013552256835884073321769999999871---853131012211111--
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA-- 152 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~-- 152 (424)
T Consensus 7 ~liG~S~~m~~v~----~~~~~~A~---------~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~ 73 (325)
T PRK11608 7 NLLGEANSFLEVL----EQVSHLAP---------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (325)
T ss_pred CCEECCHHHHHHH----HHHHHHHC---------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
T ss_conf 9858999999999----99999968---------8999898898983799999999965886799977887798997788
Q ss_pred --HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf --103556330357788765422776542233322333200233333344321025689887531058701025655643
Q gi|254780271|r 153 --GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRK 230 (424)
Q Consensus 153 --GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk 230 (424)
T Consensus 74 e~~LFG~~~g~~~~-~~~~~~g~le~a~gGTL~L~eI~~l~~~--------------~Q~~Ll~~l~~~~~~--r~g~~~ 136 (325)
T PRK11608 74 DSELFGHEAGAFTG-AQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLRVIEYGELE--RVGGSQ 136 (325)
T ss_pred HHHHCCCCCCCCCC-CCCCCCCHHHCCCCCEEEEECHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCC
T ss_conf 99872775567677-5324687343568986997374547999--------------999999998649088--579987
Q ss_pred CCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-
Q ss_conf 2224302431000123220004678988764123433321111000000016899964105677752206898720784-
Q gi|254780271|r 231 HPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV- 309 (424)
Q Consensus 231 ~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPi- 309 (424)
T Consensus 137 ~~~~~~RiIa~t~~---------~l---------------------------~~lv~--------~g~fr~dLy~rL~~~ 172 (325)
T PRK11608 137 PLQVNVRLVCATNA---------DL---------------------------PAMVN--------EGTFRADLLDRLAFD 172 (325)
T ss_pred CCCCCEEEEECCCH---------HH---------------------------HHHHH--------HCCCHHHHHHHHHHH
T ss_conf 66564688713322---------08---------------------------99998--------395679998565301
Q ss_pred EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 267211105--78999987426779999999987449899--996899999999551067874236899999967
Q gi|254780271|r 310 LATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDVEL--VFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 310 iV~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV~L--~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
T Consensus 173 ~I~lPpLReR~eDI~~L~----~~fl~~~~---~~~~~~~~~~~s~~a~~~L~~y~WPGNv--rEL~n~ierav~ 238 (325)
T PRK11608 173 VVQLPPLRERQSDIMLMA----EHFAIQMC---RELGLPLFPGFTERARETLLNYRWPGNI--RELKNVVERSVY 238 (325)
T ss_pred HCCCCCHHHCCCCHHHHH----HHHHHHHH---HHCCCCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf 115868454710199999----99999999---9829998888899999999619999659--999999999998