HHsearch alignment for GI: 254780271 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=97.63 E-value=0.00011 Score=53.33 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 74 VLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 74 ~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
T Consensus 72 ~f~ny~~~~~~~~~a~~~a~-----~~--~~~F~~---~~~NlIf~G~pGtGKTHLA~AIg~~a 125 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAK-----SI--ADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHH-----HH--HHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 63456457878999999999-----99--998731---88608998999987889999999999