HHsearch alignment for GI: 254780271 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=97.63  E-value=0.00011  Score=53.33  Aligned_cols=54  Identities=19%  Similarity=0.340  Sum_probs=37.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r   74 VLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII  137 (424)
Q Consensus        74 ~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l  137 (424)
T Consensus        72 ~f~ny~~~~~~~~~a~~~a~-----~~--~~~F~~---~~~NlIf~G~pGtGKTHLA~AIg~~a  125 (248)
T PRK12377         72 SFANYQVQNDGQRYALSQAK-----SI--ADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRL  125 (248)
T ss_pred             CCCCCCCCCHHHHHHHHHHH-----HH--HHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             63456457878999999999-----99--998731---88608998999987889999999999