HHsearch alignment for GI: 254780271 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.51 E-value=4e-13 Score=112.44 Aligned_cols=224 Identities=24% Similarity=0.348 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
T Consensus 21 rmRP~~Lde----~-vGQ~hllg~g~-~L----rr~i~----~~-~--~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~l 83 (726)
T PRK13341 21 RLRPRTLEE----F-VGQDHILGEGR-LL----RRAIK----AD-R--VGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (726)
T ss_pred HHCCCCHHH----H-CCCHHHCCCCC-HH----HHHHH----CC-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 629998777----3-59575428982-89----99997----69-9--98278889799999999999988748867998
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEC
Q ss_conf 12211111103556330357788765422776-54223332233320023333334432102568988753105870102
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVER-AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASV 223 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~-a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v 223 (424)
T Consensus 84 sAv~sg----v-kd----lr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~--------------QQD~LLp~vE~G~i~L 140 (726)
T PRK13341 84 NAVLAG----V-KD----LRAEVDAAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVENGTVTL 140 (726)
T ss_pred ECCCCC----H-HH----HHHHHHHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHCCCEEEE
T ss_conf 562037----7-99----99999999999874599659998625425887--------------8998788860683899
Q ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 56556432224302431000123220004678988764123433321111000000016899964105677752206898
Q gi|254780271|r 224 PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEF 303 (424)
Q Consensus 224 ~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl 303 (424)
T Consensus 141 -------------IGATTENP~---------------------------------------------------F~vn~AL 156 (726)
T PRK13341 141 -------------IGATTENPY---------------------------------------------------FEVNKAL 156 (726)
T ss_pred -------------EEECCCCCC---------------------------------------------------EEECHHH
T ss_conf -------------970478974---------------------------------------------------3642988
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 72078426721110578999987426779999999987449899996899999999551067874236899999967774
Q gi|254780271|r 304 IGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTM 383 (424)
Q Consensus 304 ~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedim 383 (424)
T Consensus 157 lSR~-~vf~L~~L~~~dl~~il~---rAl~d~~~g~---~~~~i~i~~~al~~l~~~s~---GDaR~aLN~LElav~~-- 224 (726)
T PRK13341 157 VSRS-RLFRLKSLEDEDLHQLLK---RALQDKERGY---GDRNIDLEPEAEKHLVDVAN---GDARSLLNALELAVES-- 224 (726)
T ss_pred HHHC-EEEEECCCCHHHHHHHHH---HHHHHHHCCC---CCCCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHHHH--
T ss_conf 8323-466743899999999999---9987674325---66787759899999999759---7399999999999970--
Q ss_pred HCCCCCCCCCEEEECHHHHCCCCC
Q ss_conf 027678984199983778558788
Q gi|254780271|r 384 FELPMLKGVSSVIISDDVVKGKAC 407 (424)
Q Consensus 384 Fe~P~~~~~~~v~Id~~~V~~~~~ 407 (424)
T Consensus 225 --~~~~~~-~~~~i~~~~~~~~~~ 245 (726)
T PRK13341 225 --TPPDED-GVIHINLAIAEESIQ 245 (726)
T ss_pred --CCCCCC-CCEEECHHHHHHHHH
T ss_conf --745768-834435999999985