HHsearch alignment for GI: 254780271 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.56  E-value=6.3e-14  Score=118.08  Aligned_cols=222  Identities=27%  Similarity=0.368  Sum_probs=143.4

Q ss_pred             CCHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             987899999742030859999---99999998658875212101355225683588407332176999999987185313
Q gi|254780271|r   66 PNPQEILRVLDEYVIGQGQAK---KVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT  142 (424)
Q Consensus        66 ~tP~eI~~~Ld~yVIGQ~~AK---kavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~  142 (424)
T Consensus         7 ~RP~~l----de-~vGQ~hllg~~~~L~~~i----~~--------~-~--~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~   66 (417)
T PRK13342          7 MRPKTL----DE-VVGQEHLLGPGKPLRRMI----EA--------G-R--LSSMILWGPPGTGKTTLARIIAGATDAEFE   66 (417)
T ss_pred             HCCCCH----HH-HCCCHHHHCCCHHHHHHH----HC--------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             499988----88-579877608971999999----76--------9-9--975998896999899999999998689889


Q ss_pred             EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r  143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS  222 (424)
Q Consensus       143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~  222 (424)
T Consensus        67 ~lnA~~~---g-v-----~dir~ii~~a~~~-~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE~g~ii  122 (417)
T PRK13342         67 ALSAVTS---G-V-----KDLREVIEEAKQS-RLGRRTILFIDEIHRFNKA--------------QQDALLPHVEDGTIT  122 (417)
T ss_pred             EEECCCC---C-H-----HHHHHHHHHHHHH-HCCCCEEEEEECHHHCCHH--------------HHHHHHHHHHCCCEE
T ss_conf             9614103---8-8-----9999999998863-1489659999782005889--------------999998751126569


Q ss_pred             CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             25655643222430243100012322000467898876412343332111100000001689996410567775220689
Q gi|254780271|r  223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPE  302 (424)
Q Consensus       223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPE  302 (424)
T Consensus       123 L-------------IgATTENP~---------------------------------------------------f~in~a  138 (417)
T PRK13342        123 L-------------IGATTENPS---------------------------------------------------FEVNPA  138 (417)
T ss_pred             E-------------EEECCCCCH---------------------------------------------------HHCCHH
T ss_conf             9-------------974157922---------------------------------------------------534898


Q ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             87207842672111057899998742677999999998744989999689999999955106787423689999996777
Q gi|254780271|r  303 FIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT  382 (424)
Q Consensus       303 l~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi  382 (424)
T Consensus       139 LlSRc~-vf~l~~L~~~di~~iL~---ral~~-e-~---~~~~~i~i~~~al~~i~~~s~---GDaR~aLN~LE~a~~--  204 (417)
T PRK13342        139 LLSRAQ-VFELKPLSEEDLEQLLK---RALED-E-R---GLGRKLELDDEALDALARLAD---GDARRALNLLELAAA--  204 (417)
T ss_pred             HHHHHH-HEECCCCCHHHHHHHHH---HHHHH-H-H---CCCCCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHHH--
T ss_conf             985657-00205899999999999---99987-7-4---337887769999999998149---859999999999985--


Q ss_pred             HHCCCCCCCCCEEEECHHHHCCCCCEEEEECCCC
Q ss_conf             4027678984199983778558788168725651
Q gi|254780271|r  383 MFELPMLKGVSSVIISDDVVKGKACPLNVYTDRR  416 (424)
Q Consensus       383 mFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~~  416 (424)
T Consensus       205 -----~~~--~~~~i~~~~~~~~~~~~~~~yDk~  231 (417)
T PRK13342        205 -----AAA--GGEVITLELLEEALQRRAARYDKD  231 (417)
T ss_pred             -----CCC--CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             -----258--997348999999984410357778