HHsearch alignment for GI: 254780271 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.56 E-value=6.3e-14 Score=118.08 Aligned_cols=222 Identities=27% Similarity=0.368 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 987899999742030859999---99999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAK---KVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AK---kavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
T Consensus 7 ~RP~~l----de-~vGQ~hllg~~~~L~~~i----~~--------~-~--~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~ 66 (417)
T PRK13342 7 MRPKTL----DE-VVGQEHLLGPGKPLRRMI----EA--------G-R--LSSMILWGPPGTGKTTLARIIAGATDAEFE 66 (417)
T ss_pred HCCCCH----HH-HCCCHHHHCCCHHHHHHH----HC--------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 499988----88-579877608971999999----76--------9-9--975998896999899999999998689889
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
T Consensus 67 ~lnA~~~---g-v-----~dir~ii~~a~~~-~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE~g~ii 122 (417)
T PRK13342 67 ALSAVTS---G-V-----KDLREVIEEAKQS-RLGRRTILFIDEIHRFNKA--------------QQDALLPHVEDGTIT 122 (417)
T ss_pred EEECCCC---C-H-----HHHHHHHHHHHHH-HCCCCEEEEEECHHHCCHH--------------HHHHHHHHHHCCCEE
T ss_conf 9614103---8-8-----9999999998863-1489659999782005889--------------999998751126569
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 25655643222430243100012322000467898876412343332111100000001689996410567775220689
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPE 302 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPE 302 (424)
T Consensus 123 L-------------IgATTENP~---------------------------------------------------f~in~a 138 (417)
T PRK13342 123 L-------------IGATTENPS---------------------------------------------------FEVNPA 138 (417)
T ss_pred E-------------EEECCCCCH---------------------------------------------------HHCCHH
T ss_conf 9-------------974157922---------------------------------------------------534898
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 87207842672111057899998742677999999998744989999689999999955106787423689999996777
Q gi|254780271|r 303 FIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 303 l~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
T Consensus 139 LlSRc~-vf~l~~L~~~di~~iL~---ral~~-e-~---~~~~~i~i~~~al~~i~~~s~---GDaR~aLN~LE~a~~-- 204 (417)
T PRK13342 139 LLSRAQ-VFELKPLSEEDLEQLLK---RALED-E-R---GLGRKLELDDEALDALARLAD---GDARRALNLLELAAA-- 204 (417)
T ss_pred HHHHHH-HEECCCCCHHHHHHHHH---HHHHH-H-H---CCCCCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHHH--
T ss_conf 985657-00205899999999999---99987-7-4---337887769999999998149---859999999999985--
Q ss_pred HHCCCCCCCCCEEEECHHHHCCCCCEEEEECCCC
Q ss_conf 4027678984199983778558788168725651
Q gi|254780271|r 383 MFELPMLKGVSSVIISDDVVKGKACPLNVYTDRR 416 (424)
Q Consensus 383 mFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~~ 416 (424)
T Consensus 205 -----~~~--~~~~i~~~~~~~~~~~~~~~yDk~ 231 (417)
T PRK13342 205 -----AAA--GGEVITLELLEEALQRRAARYDKD 231 (417)
T ss_pred -----CCC--CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf -----258--997348999999984410357778