HHsearch alignment for GI: 254780271 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=98.25 E-value=3.5e-06 Score=63.81 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=79.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871-8531310122
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-DVPFTMADAT 147 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT 147 (424)
T Consensus 12 ~~l~~~L~~gl~ERe~~i~l~lLaa-----------------lagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLlt 74 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAA-----------------LSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMT 74 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999701144699999999999-----------------72894698889951388999999998557408999987
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 111111035563303577887654227----76542233322333200233333344321025689887531058
Q gi|254780271|r 148 TLTEAGYVGEDVENIILKLLQAADYNV----ERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 148 ~~TE~GYvG~Dvesii~~L~~~a~~~v----~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
T Consensus 75 RFstPeElFGP~s--i~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfK--------------ansAILNtLLtilNE 133 (498)
T PRK13531 75 RFSTPEEVFGPLS--IQALKDEGRYERLTSGYLPEAEIVFLDEIWK--------------AGPAILNTLLTAINE 133 (498)
T ss_pred CCCCHHHHCCCCC--HHHHHHCCEEEEECCCCCCCCEEEHHHHHHH--------------CCHHHHHHHHHHHHH
T ss_conf 4698888538332--9987117848972267588661315787861--------------488999999998646