HHsearch alignment for GI: 254780271 and conserved domain: TIGR00390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=100.00 E-value=0 Score=844.58 Aligned_cols=296 Identities=44% Similarity=0.693 Sum_probs=270.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 98789999974203085999999999998658875212101355225683588407332176999999987185313101
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
T Consensus 1 ~tPreiV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~-L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVE 79 (463)
T TIGR00390 1 MTPREIVAELDKYIIGQDEAKKAVAIALRNRYRRSQ-LEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (463)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 984358875144220636678899999886677612-8711135658743043278898544799999998448914666
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------------------------------------------------
Q ss_conf 2211111103556330357788765422776-------------------------------------------------
Q gi|254780271|r 146 ATTLTEAGYVGEDVENIILKLLQAADYNVER------------------------------------------------- 176 (424)
Q Consensus 146 aT~~TE~GYvG~Dvesii~~L~~~a~~~v~~------------------------------------------------- 176 (424)
T Consensus 80 AtKfTEVGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~ 159 (463)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKD 159 (463)
T ss_pred EEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHH
T ss_conf 41001102142410036787899999999998899889999999988999872888988776667223000566874024
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780271|r 177 -------------------------------------------------------------------------------- 176 (424)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (424)
T Consensus 160 e~~~~~~~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~kkkr~l~ik~ 239 (463)
T TIGR00390 160 EEESSREALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKKKKRKLKIKE 239 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHH
T ss_conf 68999999999999987766303664671589986137871267505888556776789999862045320001145699
Q ss_pred ---------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf ---------------------------54223332233320023333334432102568988753105870102565564
Q gi|254780271|r 177 ---------------------------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR 229 (424)
Q Consensus 177 ---------------------------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr 229 (424)
T Consensus 240 A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~-e~S~~DvSrEGVQRDlLPiVEGS~V~T------ 312 (463)
T TIGR00390 240 AKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGK-ESSGADVSREGVQRDLLPIVEGSTVNT------ 312 (463)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEE------
T ss_conf 9999899988733696664389999998478289853035421688-867888765565101142022666431------
Q ss_pred CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC
Q ss_conf 32224302431000123220004678988764123433321111000000016899964105677752206898720784
Q gi|254780271|r 230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV 309 (424)
Q Consensus 230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPi 309 (424)
T Consensus 313 -----KyG~VkTdHiLFIAaGAF~----------------------------------lA-----KPSDLIPELQGRfPi 348 (463)
T TIGR00390 313 -----KYGSVKTDHILFIAAGAFH----------------------------------LA-----KPSDLIPELQGRFPI 348 (463)
T ss_pred -----ECCEEECCHHHHHHHHHHC----------------------------------CC-----CCCCCCCHHHCCCCH
T ss_conf -----0010422157876752320----------------------------------27-----776666311066737
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 267211105789999874267799999999874498999968999999995510-----678742368999999677740
Q gi|254780271|r 310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMF 384 (424)
Q Consensus 310 iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimF 384 (424)
T Consensus 349 rVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~ay~~N~~teniGARRLHTv~E~lledisF 428 (463)
T TIGR00390 349 RVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAELAYNVNQKTENIGARRLHTVLERLLEDISF 428 (463)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 78767632999999620834368999999887627640335568999999999816442334650466899999987512
Q ss_pred CCCCCCCCCEEEECHHHHCCCCCEEEEECC
Q ss_conf 276789841999837785587881687256
Q gi|254780271|r 385 ELPMLKGVSSVIISDDVVKGKACPLNVYTD 414 (424)
Q Consensus 385 e~P~~~~~~~v~Id~~~V~~~~~p~~~~~~ 414 (424)
T Consensus 429 ea~D~~~-~~~~I~~~YV~~kL~~~~~~~d 457 (463)
T TIGR00390 429 EAPDVSG-QKVTITADYVEKKLGDLVADED 457 (463)
T ss_pred CCCCCCC-CEEEECHHHHHHHHHHHHHHCC
T ss_conf 6668634-3245078999999878873022