HHsearch alignment for GI: 254780271 and conserved domain: TIGR00390

>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=100.00  E-value=0  Score=844.58  Aligned_cols=296  Identities=44%  Similarity=0.693  Sum_probs=270.0

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf             98789999974203085999999999998658875212101355225683588407332176999999987185313101
Q gi|254780271|r   66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD  145 (424)
Q Consensus        66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd  145 (424)
T Consensus         1 ~tPreiV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~-L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVE   79 (463)
T TIGR00390         1 MTPREIVAELDKYIIGQDEAKKAVAIALRNRYRRSQ-LEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (463)
T ss_pred             CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             984358875144220636678899999886677612-8711135658743043278898544799999998448914666


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------------------------------------------------
Q ss_conf             2211111103556330357788765422776-------------------------------------------------
Q gi|254780271|r  146 ATTLTEAGYVGEDVENIILKLLQAADYNVER-------------------------------------------------  176 (424)
Q Consensus       146 aT~~TE~GYvG~Dvesii~~L~~~a~~~v~~-------------------------------------------------  176 (424)
T Consensus        80 AtKfTEVGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~  159 (463)
T TIGR00390        80 ATKFTEVGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKD  159 (463)
T ss_pred             EEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHH
T ss_conf             41001102142410036787899999999998899889999999988999872888988776667223000566874024


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780271|r  177 --------------------------------------------------------------------------------  176 (424)
Q Consensus       177 --------------------------------------------------------------------------------  176 (424)
                                                                                                      
T Consensus       160 e~~~~~~~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~kkkr~l~ik~  239 (463)
T TIGR00390       160 EEESSREALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKKKKRKLKIKE  239 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHH
T ss_conf             68999999999999987766303664671589986137871267505888556776789999862045320001145699


Q ss_pred             ---------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf             ---------------------------54223332233320023333334432102568988753105870102565564
Q gi|254780271|r  177 ---------------------------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR  229 (424)
Q Consensus       177 ---------------------------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr  229 (424)
T Consensus       240 A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~-e~S~~DvSrEGVQRDlLPiVEGS~V~T------  312 (463)
T TIGR00390       240 AKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGK-ESSGADVSREGVQRDLLPIVEGSTVNT------  312 (463)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEE------
T ss_conf             9999899988733696664389999998478289853035421688-867888765565101142022666431------


Q ss_pred             CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC
Q ss_conf             32224302431000123220004678988764123433321111000000016899964105677752206898720784
Q gi|254780271|r  230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV  309 (424)
Q Consensus       230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPi  309 (424)
T Consensus       313 -----KyG~VkTdHiLFIAaGAF~----------------------------------lA-----KPSDLIPELQGRfPi  348 (463)
T TIGR00390       313 -----KYGSVKTDHILFIAAGAFH----------------------------------LA-----KPSDLIPELQGRFPI  348 (463)
T ss_pred             -----ECCEEECCHHHHHHHHHHC----------------------------------CC-----CCCCCCCHHHCCCCH
T ss_conf             -----0010422157876752320----------------------------------27-----776666311066737


Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             267211105789999874267799999999874498999968999999995510-----678742368999999677740
Q gi|254780271|r  310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMF  384 (424)
Q Consensus       310 iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimF  384 (424)
T Consensus       349 rVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~ay~~N~~teniGARRLHTv~E~lledisF  428 (463)
T TIGR00390       349 RVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAELAYNVNQKTENIGARRLHTVLERLLEDISF  428 (463)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             78767632999999620834368999999887627640335568999999999816442334650466899999987512


Q ss_pred             CCCCCCCCCEEEECHHHHCCCCCEEEEECC
Q ss_conf             276789841999837785587881687256
Q gi|254780271|r  385 ELPMLKGVSSVIISDDVVKGKACPLNVYTD  414 (424)
Q Consensus       385 e~P~~~~~~~v~Id~~~V~~~~~p~~~~~~  414 (424)
T Consensus       429 ea~D~~~-~~~~I~~~YV~~kL~~~~~~~d  457 (463)
T TIGR00390       429 EAPDVSG-QKVTITADYVEKKLGDLVADED  457 (463)
T ss_pred             CCCCCCC-CEEEECHHHHHHHHHHHHHHCC
T ss_conf             6668634-3245078999999878873022