HHsearch alignment for GI: 254780271 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.70 E-value=2.5e-08 Score=78.82 Aligned_cols=99 Identities=31% Similarity=0.540 Sum_probs=61.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeims-ky~Ge~-e~~lr~if~eaee----naP~iifideidaia 312 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMS-KYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIA 312 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH-HHCCCC-HHHHHHHHHHHHH----CCCCEEEEECHHHCC
T ss_conf 9873587558986178999998753055178850603443-313630-7899999986530----587078741211007
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333333443210256898875310587
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 313 Pkr~e~--~Geve~r-~v~qlltlmdGl 337 (980)
T TIGR01243 313 PKREEV--TGEVEKR-VVAQLLTLMDGL 337 (980)
T ss_pred CCCCCH--HHHHHHH-HHHHHHHHHHHH
T ss_conf 641000--0168899-999999997400