HHsearch alignment for GI: 254780271 and conserved domain: TIGR02329
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=96.58 E-value=0.0035 Score=42.89 Aligned_cols=229 Identities=26% Similarity=0.395 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----------CCCEEEHHHHH
Q ss_conf 0859999999999986588752121013552256835884073321769999999871-----------85313101221
Q gi|254780271|r 80 IGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----------DVPFTMADATT 148 (424)
Q Consensus 80 IGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----------~~PF~~vdaT~ 148 (424)
T Consensus 322 ~G~s~~Me~VR~~-v~lYAr------------s~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGA 388 (658)
T TIGR02329 322 LGESAAMEQVRAL-VRLYAR------------SAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGA 388 (658)
T ss_pred CCCCCCHHHHHHH-HHHHCC------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCH
T ss_conf 3898213899999-985268------------865067514777228999999759998746665013378846874746
Q ss_pred HHHH-------HHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 1111-------103-55633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 149 LTEA-------GYV-GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 149 ~TE~-------GYv-G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
T Consensus 389 i~EsLLEaELFGYeeGAFTG---aRrGG-~~GL~E~Ah~GTLFLDEIGEmP----LP----------LQtRLLRVLeEre 450 (658)
T TIGR02329 389 IAESLLEAELFGYEEGAFTG---ARRGG-RTGLIEAAHRGTLFLDEIGEMP----LP----------LQTRLLRVLEERE 450 (658)
T ss_pred HHHHHHHHHHCCCCCCCCCC---CCCCC-CCCHHHHHCCCCEEEHHHCCCC----CH----------HHHHHHHHHHCCC
T ss_conf 56888877642676665016---77677-6122220057951001003578----61----------4677777651221
Q ss_pred E-ECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 1-025655643222430243100012322000467898876412343332111100000001689996410567775220
Q gi|254780271|r 221 A-SVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 (424)
Q Consensus 221 ~-~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gl 299 (424)
T Consensus 451 V~Rv----G~----~~P~~VDvRvv---a-Ath~~L~~~v~~G------rF-----R~DLfYRL~~Lri----------~ 497 (658)
T TIGR02329 451 VVRV----GG----TEPVPVDVRVV---A-ATHCALETAVQQG------RF-----RRDLFYRLSILRI----------D 497 (658)
T ss_pred EEEC----CC----CCCCEEEEEEE---E-CCCHHHHHHHHCC------CC-----CHHHHHHHHHHHH----------C
T ss_conf 4761----78----75402444343---3-1222258798578------82-----4228999999851----------4
Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCC----CCHHHHH
Q ss_conf 68987207842672111057899998-74267799999999874498999968999999995510-678----7423689
Q gi|254780271|r 300 IPEFIGRLPVLATLEDLDENSLIRIL-SEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKT----GARGLRS 373 (424)
Q Consensus 300 iPEl~GRlPiiV~L~~Lt~edl~rIL-tepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~ni----GAR~Lrt 373 (424)
T Consensus 498 lPpLR~R~~Di~~L---a~~~l~~~~rrePr--------~-----~l~~P~s~~~~q~L~~~~~~L~~y~WpGNvRELrn 561 (658)
T TIGR02329 498 LPPLRERPDDILPL---AAEYLKQALRREPR--------A-----ALALPLSEAALQELAAVEDALQRYAWPGNVRELRN 561 (658)
T ss_pred CCCCCCCHHHHHHH---HHHHHHHHHCCCCH--------H-----HHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 78766864459999---99999875322515--------7-----65188638999887437889861689984378877
Q ss_pred HHHHHHHHHH-HCCCC
Q ss_conf 9999967774-02767
Q gi|254780271|r 374 ILEKILLDTM-FELPM 388 (424)
Q Consensus 374 IiE~iLedim-Fe~P~ 388 (424)
T Consensus 562 l~ERl~~~l~dtda~~ 577 (658)
T TIGR02329 562 LVERLALYLSDTDAEP 577 (658)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999988864035563