>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.

Probab=99.19 E-value=5.8e-11 Score=97.32 Aligned_cols=111 Identities=29% Similarity=0.460 Sum_probs=81.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH--------HHHHHH Q ss_conf 308599999999999865887521210135522568358840733217699999998718531310--------122111 Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA--------DATTLT 150 (424) Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v--------daT~~T 150 (424) T Consensus 16 ~~GQ~~iv~tL~NAi~~~--ri------------~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~ 80 (363) T TIGR02397 16 VIGQEHIVKTLKNAIKNG--RI------------AHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEIN 80 (363) T ss_pred CCCCHHHHHHHHHHHHHC--CC------------CCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH T ss_conf 235179999999999718--96------------6234502859976355899999986588-78778777750227765 Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 11103---------5563303577887654227765422333223332002333333443210256898875310587 Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424) Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424) T Consensus 81 ~g~~~DviEiDAASN~gVD~-IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~--------------AFNALLKTLEEP 143 (363) T TIGR02397 81 SGSSLDVIEIDAASNNGVDD-IRELRENVKYAPSKGKYKVYIIDEVHMLSKS--------------AFNALLKTLEEP 143 (363) T ss_pred CCCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCCCCCCEEEEECCCCCCHH--------------HHHHHHHHHCCC T ss_conf 28986668864865687889-9999873036875544335887323028656--------------899987652279

HHsearch alignment for GI: 254780271 and conserved domain: TIGR02397