HHsearch alignment for GI: 254780271 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.10 E-value=0.0079 Score=40.37 Aligned_cols=49 Identities=43% Similarity=0.605 Sum_probs=29.2
Q ss_pred CCCCEEEE-ECCCCCHHH-HHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 56835884-073321769-99999987185313101221111110355633035778876
Q gi|254780271|r 112 AKSNILLV-GPTGCGKTY-LAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQA 169 (424)
Q Consensus 112 ~~~NILli-GPTGvGKTe-lAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~ 169 (424)
T Consensus 243 rpHGIiLVTGPTGSGKtTTLYaaL~~L-N~~----~~NIlT----vEDPVEY~i~GIgQ~ 293 (495)
T TIGR02533 243 RPHGIILVTGPTGSGKTTTLYAALSRL-NTP----ERNILT----VEDPVEYQIEGIGQI 293 (495)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHH-CCC----CCCEEE----EECCEEEEECCCCEE
T ss_conf 889618841778985258899999863-589----971568----657824762487636