HHsearch alignment for GI: 254780271 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.83 E-value=5.9e-05 Score=55.25 Aligned_cols=171 Identities=23% Similarity=0.356 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH----CCCEEEHHHHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871----8531310122111--------11103556330357788765422776542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII----DVPFTMADATTLT--------EAGYVGEDVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l----~~PF~~vdaT~~T--------E~GYvG~Dvesii~~L~~~a~~~v~~a~~ 179 (424)
T Consensus 228 ~KNNPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRG-DFE~RLK~V~~----Ei~~~~~ 302 (774)
T TIGR02639 228 KKNNPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRG-DFEERLKAVVS----EIEKEPN 302 (774)
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCC-HHHHHHHHHHH----HHHCCCC
T ss_conf 678872044888644899999999864156467002478345404345641024542-47899999999----9852899
Q ss_pred H-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
Q ss_conf 2-333223332002333333443210256898875310587010256556432224302431000123220004678988
Q gi|254780271|r 180 G-IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRI 258 (424)
Q Consensus 180 ~-iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i 258 (424)
T Consensus 303 anILFIDEIHTIVGAGATSGGsmDAS-----NLLKPaL~~G~iR-----------------------CIGsTTy~E---- 350 (774)
T TIGR02639 303 ANILFIDEIHTIVGAGATSGGSMDAS-----NLLKPALASGKIR-----------------------CIGSTTYEE---- 350 (774)
T ss_pred CCEEEEECCCCEEECCCCCCHHHHHH-----HHHHHHHHCCCEE-----------------------EECCCCHHH----
T ss_conf 95466411010331787875155244-----3211253078778-----------------------622652486----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76412343332111100000001689996410567775220689872078426721110578999987426779999999
Q gi|254780271|r 259 ISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQC 338 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~ 338 (424)
T Consensus 351 -----------------Y~~~FeKDrALsR-----------------RFQ-KIDv~EPs~eet~~ILk----GLk~~YE~ 391 (774)
T TIGR02639 351 -----------------YKNHFEKDRALSR-----------------RFQ-KIDVGEPSIEETVKILK----GLKEQYEE 391 (774)
T ss_pred -----------------HHCHHHCCCCCCC-----------------CCC-EECCCCCCHHHHHHHHH----HHHHHHHC
T ss_conf -----------------4111010202165-----------------423-31179578889999998----65542013
Q ss_pred HHHHCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9874498999968999999995510
Q gi|254780271|r 339 LFDMEDVELVFHEDALREIARCAIA 363 (424)
Q Consensus 339 Ll~~egV~L~FtdeAi~~IA~~A~~ 363 (424)
T Consensus 392 f-----H~V~Y~~eal~~Av~LS~r 411 (774)
T TIGR02639 392 F-----HHVKYSDEALEAAVELSAR 411 (774)
T ss_pred C-----CCEECCHHHHHHHHHHHHH
T ss_conf 2-----5011386999999999888