HHsearch alignment for GI: 254780271 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.65 E-value=1.2e-08 Score=81.20 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=79.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-----------------
Q ss_conf 588407332176999999987185313101-22111111035563303577887654227765-----------------
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMAD-ATTLTEAGYVGEDVENIILKLLQAADYNVERA----------------- 177 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vd-aT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a----------------- 177 (424)
T Consensus 24 vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~d~~~~~W~D~rLt~Av 103 (265)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLEDIVRQNWVDNRLTLAV 103 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 67447888556899999997368968998658232654423154675222232012111342512200266783578997
Q ss_pred --HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC---CCCCEEEEECCHHH
Q ss_conf --422333223332002333333443210256898875310587010256556432---22430243100012
Q gi|254780271|r 178 --QRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH---PQQEFLQVDTTNIL 245 (424)
Q Consensus 178 --~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~---~~~~~~~Idt~nil 245 (424)
T Consensus 104 ~eG~TLVY-dEF~R--------------skP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~ 161 (265)
T TIGR02640 104 REGFTLVY-DEFTR--------------SKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPV 161 (265)
T ss_pred HCCCEEEE-CCCCC--------------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCC
T ss_conf 56972766-47578--------------862045656755552321588878778722578870246314870