HHsearch alignment for GI: 254780271 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=95.91 E-value=0.004 Score=42.44 Aligned_cols=190 Identities=25% Similarity=0.448 Sum_probs=113.9
Q ss_pred CCCCCCE--EEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2256835--884073321769999999871---8531310122111----111035563303577887654227765422
Q gi|254780271|r 110 ELAKSNI--LLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT----EAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 110 ei~~~NI--LliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T----E~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
T Consensus 160 kvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGA-FTGA~k~T~GKIE~A~~G 238 (451)
T TIGR02915 160 KVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGA-FTGAVKQTLGKIEYAHGG 238 (451)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHH-HHHHHCCCCCCEEEECCC
T ss_conf 2120000130104667117899989842057897773444167457524667760341012-422003477616750688
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 33322333200233333344321025689887531058701025655643222430243100012322000467898876
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIS 260 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~ 260 (424)
T Consensus 239 TLFLDEIGDLP~--------------~LQAKLLRFLQErVIE--R~GGR~-----eIPVDVRvv---CAT-nqdL~~~i~ 293 (451)
T TIGR02915 239 TLFLDEIGDLPL--------------NLQAKLLRFLQERVIE--RLGGRE-----EIPVDVRVV---CAT-NQDLKKMIA 293 (451)
T ss_pred CCCCCCHHCCCH--------------HHHHHHHHHHHHHHHH--CCCCCC-----CCCCCEEEE---ECC-CHHHHHHHH
T ss_conf 301111220676--------------6899999875466631--058872-----456142675---032-246899985
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CEEEECCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 412343332111100000001689996410567775220689872078-4267211105--7899998742677999999
Q gi|254780271|r 261 ARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-VLATLEDLDE--NSLIRILSEPKNALIKQYQ 337 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~--edl~rILtepknsLikQy~ 337 (424)
T Consensus 294 eg------~FR--------------------EDL---------fYRl~Eisi~iPPLR~R~gDa~-lL---A~~Fl~rf~ 334 (451)
T TIGR02915 294 EG------TFR--------------------EDL---------FYRLAEISITIPPLRDRDGDAV-LL---ANAFLERFA 334 (451)
T ss_pred CC------CCC--------------------CCC---------EEEEEEEEEECCCCCCCHHHHH-HH---HHHHHHHHH
T ss_conf 48------972--------------------000---------1346667862588998601899-99---999999887
Q ss_pred HHHHHCCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf 99874498999968999999995510678
Q gi|254780271|r 338 CLFDMEDVELVFHEDALREIARCAIAHKT 366 (424)
Q Consensus 338 ~Ll~~egV~L~FtdeAi~~IA~~A~~~ni 366 (424)
T Consensus 335 ~~~k--~~~~~F~~DA~~ale~h~WPGNv 361 (451)
T TIGR02915 335 RELK--RKAKGFTDDALRALEAHKWPGNV 361 (451)
T ss_pred HHHC--CCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 8733--02166069999997606998841