HHsearch alignment for GI: 254780271 and conserved domain: TIGR02915

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=95.91  E-value=0.004  Score=42.44  Aligned_cols=190  Identities=25%  Similarity=0.448  Sum_probs=113.9

Q ss_pred             CCCCCCE--EEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             2256835--884073321769999999871---8531310122111----111035563303577887654227765422
Q gi|254780271|r  110 ELAKSNI--LLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT----EAGYVGEDVENIILKLLQAADYNVERAQRG  180 (424)
Q Consensus       110 ei~~~NI--LliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T----E~GYvG~Dvesii~~L~~~a~~~v~~a~~~  180 (424)
T Consensus       160 kvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGA-FTGA~k~T~GKIE~A~~G  238 (451)
T TIGR02915       160 KVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGA-FTGAVKQTLGKIEYAHGG  238 (451)
T ss_pred             HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHH-HHHHHCCCCCCEEEECCC
T ss_conf             2120000130104667117899989842057897773444167457524667760341012-422003477616750688


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf             33322333200233333344321025689887531058701025655643222430243100012322000467898876
Q gi|254780271|r  181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIS  260 (424)
Q Consensus       181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~  260 (424)
T Consensus       239 TLFLDEIGDLP~--------------~LQAKLLRFLQErVIE--R~GGR~-----eIPVDVRvv---CAT-nqdL~~~i~  293 (451)
T TIGR02915       239 TLFLDEIGDLPL--------------NLQAKLLRFLQERVIE--RLGGRE-----EIPVDVRVV---CAT-NQDLKKMIA  293 (451)
T ss_pred             CCCCCCHHCCCH--------------HHHHHHHHHHHHHHHH--CCCCCC-----CCCCCEEEE---ECC-CHHHHHHHH
T ss_conf             301111220676--------------6899999875466631--058872-----456142675---032-246899985


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CEEEECCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf             412343332111100000001689996410567775220689872078-4267211105--7899998742677999999
Q gi|254780271|r  261 ARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-VLATLEDLDE--NSLIRILSEPKNALIKQYQ  337 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~--edl~rILtepknsLikQy~  337 (424)
T Consensus       294 eg------~FR--------------------EDL---------fYRl~Eisi~iPPLR~R~gDa~-lL---A~~Fl~rf~  334 (451)
T TIGR02915       294 EG------TFR--------------------EDL---------FYRLAEISITIPPLRDRDGDAV-LL---ANAFLERFA  334 (451)
T ss_pred             CC------CCC--------------------CCC---------EEEEEEEEEECCCCCCCHHHHH-HH---HHHHHHHHH
T ss_conf             48------972--------------------000---------1346667862588998601899-99---999999887


Q ss_pred             HHHHHCCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf             99874498999968999999995510678
Q gi|254780271|r  338 CLFDMEDVELVFHEDALREIARCAIAHKT  366 (424)
Q Consensus       338 ~Ll~~egV~L~FtdeAi~~IA~~A~~~ni  366 (424)
T Consensus       335 ~~~k--~~~~~F~~DA~~ale~h~WPGNv  361 (451)
T TIGR02915       335 RELK--RKAKGFTDDALRALEAHKWPGNV  361 (451)
T ss_pred             HHHC--CCCCCHHHHHHHHHHCCCCCCCH
T ss_conf             8733--02166069999997606998841