HHsearch alignment for GI: 254780271 and conserved domain: TIGR02974

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.33  E-value=0.00031  Score=50.26  Aligned_cols=215  Identities=21%  Similarity=0.343  Sum_probs=124.4

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             835884073321769999999871---853131012211111----1035563303577887654227765422333223
Q gi|254780271|r  114 SNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYIDE  186 (424)
Q Consensus       114 ~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE  186 (424)
T Consensus        23 rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAF-TGA~~rh~GRFERAdGGTLFLDE  101 (349)
T TIGR02974        23 RPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAF-TGAKKRHEGRFERADGGTLFLDE  101 (349)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCH-HHHCCCCCCCCEECCCCCCHHHH
T ss_conf             86688614674689999885332465548862661012782555566531001001-30304688985443688738888


Q ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf             33200233333344321025689887531058701025655643222430243100012322000467898876412343
Q gi|254780271|r  187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKA  266 (424)
Q Consensus       187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~  266 (424)
T Consensus       102 lAtas~~--------------VQEKLLRViEYG~--fERVGG~~~l~vDVRlvaATN~---------DLP~lA~~G----  152 (349)
T TIGR02974       102 LATASLA--------------VQEKLLRVIEYGE--FERVGGSQTLKVDVRLVAATNA---------DLPALAAEG----  152 (349)
T ss_pred             HHCCCHH--------------HHHHHHHHHCCCC--EEECCCCCEEEECCEEEECCCC---------CHHHHHHCC----
T ss_conf             7142167--------------6786612010130--3301786047735136762141---------369898658----


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf             33211110000000168999641056777522068987207842672111057899998742677999999998744-98
Q gi|254780271|r  267 SIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DV  345 (424)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV  345 (424)
T Consensus       153 --~FR-----------aDLLDRLAF-DVi---~LPPLR~R~~D--------------I~-----lLAe~FA~~Ma~EL~~  196 (349)
T TIGR02974       153 --RFR-----------ADLLDRLAF-DVI---TLPPLRERQED--------------IM-----LLAEHFAIRMARELGL  196 (349)
T ss_pred             --CCC-----------CHHHHHHHH-HHC---CCCCCCCCCCC--------------HH-----HHHHHHHHHHHHHHCC
T ss_conf             --984-----------014554456-550---79788887232--------------78-----9999999999997078


Q ss_pred             E--EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECH
Q ss_conf             9--99968999999995510678742368999999677740276789841999837
Q gi|254780271|r  346 E--LVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISD  399 (424)
Q Consensus       346 ~--L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~  399 (424)
T Consensus       197 ~~F~GFt~~A~~~L~~Y~WPGNv--RELkNvvERsVyR~~~~~---~~i~~i~~dP  247 (349)
T TIGR02974       197 PLFPGFTPQAREQLLEYHWPGNV--RELKNVVERSVYRHGREE---APIEEIIIDP  247 (349)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHCCCCC---CCHHHEEECC
T ss_conf             65511438999999706888852--124446766653058766---4201201077