HHsearch alignment for GI: 254780271 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.4e-45 Score=339.43 Aligned_cols=275 Identities=24% Similarity=0.350 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEH
Q ss_conf 7899999742030859999999999986588752121013552256835884073321769999999871---8531310
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMA 144 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~v 144 (424)
T Consensus 557 l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl----~d~~rPi--gsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~ 630 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTARAGL----EDPRKPL--GVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC----CCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 886799999997284999999999999987179----9999985--6899878998778999999999971986114784
Q ss_pred HHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12211111-----------1035563303577887654227765422333223332002333333443210256898875
Q gi|254780271|r 145 DATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALL 213 (424)
Q Consensus 145 daT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LL 213 (424)
T Consensus 631 DMSEy~E~hsvsrLiGaPPGYVGy~eGG-------~LTe~Vrr~PysVvLfDEIEKAHpd--------------V~nilL 689 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEGG-------VLTEAVRRKPYSVVLLDEVEKAHPD--------------VLELFY 689 (852)
T ss_pred CCHHHCCHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHHCCCEEEEECHHHHCCHH--------------HHHHHH
T ss_conf 2243210436878638999766748777-------2109888099868886113002889--------------999999
Q ss_pred HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 31058701025655643222430243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r 214 KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED 293 (424)
Q Consensus 214 kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 293 (424)
T Consensus 690 QvlD~G--~LtD~~Gr~vdF~NtIIImTSN~-----Gs~----~i~~~-----~~~~~-------~~~~~~~~~~~v~~~ 746 (852)
T TIGR03345 690 QVFDKG--VMEDGEGREIDFKNTVILLTSNA-----GSD----LIMAL-----CADPE-------TAPDPEALLEALRPE 746 (852)
T ss_pred HHHCCC--EEECCCCCEEECEEEEEEECCCH-----HHH----HHHHH-----HCCCC-------CCCCHHHHHHHHHHH
T ss_conf 872467--77579999884521299975724-----479----99864-----03765-------556689999999999
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744-98999968999999995510678742368
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DVELVFHEDALREIARCAIAHKTGARGLR 372 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV~L~FtdeAi~~IA~~A~~~niGAR~Lr 372 (424)
T Consensus 747 l~~-~F~PEFlnRi-~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~ 820 (852)
T TIGR03345 747 LLK-VFKPAFLGRM-TVIPYLPLDDDVLAAIVR----LKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNID 820 (852)
T ss_pred HHH-HCCHHHHCCE-EEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 983-4798886456-689736899999999999----9999999999862896899889999999982899776864389
Q ss_pred HHHHHHHHHHHHCC-----CCCCCCCEEEEC
Q ss_conf 99999967774027-----678984199983
Q gi|254780271|r 373 SILEKILLDTMFEL-----PMLKGVSSVIIS 398 (424)
Q Consensus 373 tIiE~iLedimFe~-----P~~~~~~~v~Id 398 (424)
T Consensus 821 r~I~~~i~~~la~~iL~~~~~g~~~~~i~~~ 851 (852)
T TIGR03345 821 AILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999998899999999987089972488815