HHsearch alignment for GI: 254780271 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00  E-value=1.4e-45  Score=339.43  Aligned_cols=275  Identities=24%  Similarity=0.350  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEH
Q ss_conf             7899999742030859999999999986588752121013552256835884073321769999999871---8531310
Q gi|254780271|r   68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMA  144 (424)
Q Consensus        68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~v  144 (424)
T Consensus       557 l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl----~d~~rPi--gsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~  630 (852)
T TIGR03345       557 VLSLPDRLAERVIGQDHALEAIAERIRTARAGL----EDPRKPL--GVFLLVGPSGVGKTETALALAELLYGGEQNLITI  630 (852)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC----CCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             886799999997284999999999999987179----9999985--6899878998778999999999971986114784


Q ss_pred             HHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             12211111-----------1035563303577887654227765422333223332002333333443210256898875
Q gi|254780271|r  145 DATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALL  213 (424)
Q Consensus       145 daT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LL  213 (424)
T Consensus       631 DMSEy~E~hsvsrLiGaPPGYVGy~eGG-------~LTe~Vrr~PysVvLfDEIEKAHpd--------------V~nilL  689 (852)
T TIGR03345       631 NMSEFQEAHTVSRLKGSPPGYVGYGEGG-------VLTEAVRRKPYSVVLLDEVEKAHPD--------------VLELFY  689 (852)
T ss_pred             CCHHHCCHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHHCCCEEEEECHHHHCCHH--------------HHHHHH
T ss_conf             2243210436878638999766748777-------2109888099868886113002889--------------999999


Q ss_pred             HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             31058701025655643222430243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r  214 KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED  293 (424)
Q Consensus       214 kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  293 (424)
T Consensus       690 QvlD~G--~LtD~~Gr~vdF~NtIIImTSN~-----Gs~----~i~~~-----~~~~~-------~~~~~~~~~~~v~~~  746 (852)
T TIGR03345       690 QVFDKG--VMEDGEGREIDFKNTVILLTSNA-----GSD----LIMAL-----CADPE-------TAPDPEALLEALRPE  746 (852)
T ss_pred             HHHCCC--EEECCCCCEEECEEEEEEECCCH-----HHH----HHHHH-----HCCCC-------CCCCHHHHHHHHHHH
T ss_conf             872467--77579999884521299975724-----479----99864-----03765-------556689999999999


Q ss_pred             HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             77522068987207842672111057899998742677999999998744-98999968999999995510678742368
Q gi|254780271|r  294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DVELVFHEDALREIARCAIAHKTGARGLR  372 (424)
Q Consensus       294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV~L~FtdeAi~~IA~~A~~~niGAR~Lr  372 (424)
T Consensus       747 l~~-~F~PEFlnRi-~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~  820 (852)
T TIGR03345       747 LLK-VFKPAFLGRM-TVIPYLPLDDDVLAAIVR----LKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNID  820 (852)
T ss_pred             HHH-HCCHHHHCCE-EEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             983-4798886456-689736899999999999----9999999999862896899889999999982899776864389


Q ss_pred             HHHHHHHHHHHHCC-----CCCCCCCEEEEC
Q ss_conf             99999967774027-----678984199983
Q gi|254780271|r  373 SILEKILLDTMFEL-----PMLKGVSSVIIS  398 (424)
Q Consensus       373 tIiE~iLedimFe~-----P~~~~~~~v~Id  398 (424)
T Consensus       821 r~I~~~i~~~la~~iL~~~~~g~~~~~i~~~  851 (852)
T TIGR03345       821 AILNQTLLPELSRQILERLAAGEPIERIHLD  851 (852)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9999998899999999987089972488815