HHsearch alignment for GI: 254780271 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.81 E-value=1.3e-07 Score=73.80 Aligned_cols=128 Identities=27% Similarity=0.460 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 9878999997420---------------3085999999999998658875212101355225683588407332176999
Q gi|254780271|r 66 PNPQEILRVLDEY---------------VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLA 130 (424)
Q Consensus 66 ~tP~eI~~~Ld~y---------------VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelA 130 (424)
T Consensus 147 ~~~~~~~~~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~---Rr------------~KNNpiLVGepGVGKTAIv 211 (852)
T TIGR03346 147 ANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLS---RR------------TKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HH------------CCCCCCEECCCCCCHHHHH
T ss_conf 88754357899998889999982899977383699999999998---73------------2489721279998799999
Q ss_pred HHHHHHH---CCCEEE-------HHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871---853131-------012211-11110355633035778876542277654-22333223332002333333
Q gi|254780271|r 131 QTLARII---DVPFTM-------ADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPS 198 (424)
Q Consensus 131 r~LAk~l---~~PF~~-------vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~-~~iv~iDEidKi~~~~~~~~ 198 (424)
T Consensus 212 EGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGe-FEeRlk~ii~e----v~~~~~~iILFIDEiHtliGaG~-~~ 285 (852)
T TIGR03346 212 EGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE-FEERLKAVLNE----VTKSEGQIILFIDELHTLVGAGK-AE 285 (852)
T ss_pred HHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHH-HHHHHHHHHHH----HHHCCCCEEEEEHHHHHHCCCCC-CC
T ss_conf 99999986699997885185127528877521530078-99999999999----98589987999612555326887-66
Q ss_pred CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 443210256898875310587
Q gi|254780271|r 199 ITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 199 ~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 286 -----G~~DAaNlLKPaLarG 301 (852)
T TIGR03346 286 -----GAMDAGNMLKPALARG 301 (852)
T ss_pred -----CCCCHHHHHHHHHHCC
T ss_conf -----6410677743787479