HHsearch alignment for GI: 254780271 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.81  E-value=1.3e-07  Score=73.80  Aligned_cols=128  Identities=27%  Similarity=0.460  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             9878999997420---------------3085999999999998658875212101355225683588407332176999
Q gi|254780271|r   66 PNPQEILRVLDEY---------------VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLA  130 (424)
Q Consensus        66 ~tP~eI~~~Ld~y---------------VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelA  130 (424)
T Consensus       147 ~~~~~~~~~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~---Rr------------~KNNpiLVGepGVGKTAIv  211 (852)
T TIGR03346       147 ANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLS---RR------------TKNNPVLIGEPGVGKTAIV  211 (852)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HH------------CCCCCCEECCCCCCHHHHH
T ss_conf             88754357899998889999982899977383699999999998---73------------2489721279998799999


Q ss_pred             HHHHHHH---CCCEEE-------HHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999871---853131-------012211-11110355633035778876542277654-22333223332002333333
Q gi|254780271|r  131 QTLARII---DVPFTM-------ADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPS  198 (424)
Q Consensus       131 r~LAk~l---~~PF~~-------vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~-~~iv~iDEidKi~~~~~~~~  198 (424)
T Consensus       212 EGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGe-FEeRlk~ii~e----v~~~~~~iILFIDEiHtliGaG~-~~  285 (852)
T TIGR03346       212 EGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE-FEERLKAVLNE----VTKSEGQIILFIDELHTLVGAGK-AE  285 (852)
T ss_pred             HHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHH-HHHHHHHHHHH----HHHCCCCEEEEEHHHHHHCCCCC-CC
T ss_conf             99999986699997885185127528877521530078-99999999999----98589987999612555326887-66


Q ss_pred             CCCCCCHHHHHHHHHHHCCCC
Q ss_conf             443210256898875310587
Q gi|254780271|r  199 ITRDVSGEGVQQALLKIMEGT  219 (424)
Q Consensus       199 ~~~dvs~~gvq~~LLkileg~  219 (424)
T Consensus       286 -----G~~DAaNlLKPaLarG  301 (852)
T TIGR03346       286 -----GAMDAGNMLKPALARG  301 (852)
T ss_pred             -----CCCCHHHHHHHHHHCC
T ss_conf             -----6410677743787479