HHsearch alignment for GI: 254780271 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.43 E-value=0.00037 Score=49.68 Aligned_cols=23 Identities=52% Similarity=0.641 Sum_probs=16.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 68358840733217699999998
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk 135 (424)
T Consensus 194 ~~vi~lvGPTGVGKTTTiAKLAa 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 72799977888757889999999