HHsearch alignment for GI: 254780271 and conserved domain: cd00464

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73  E-value=4.8e-05  Score=55.93  Aligned_cols=54  Identities=31%  Similarity=0.475  Sum_probs=40.0

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             358840733217699999998718531310122111111035563303577887654
Q gi|254780271|r  115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD  171 (424)
Q Consensus       115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~  171 (424)
T Consensus         1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~--~Ie-~~~g~si~eif~~~Ge~~F   54 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDE--LIE-QRAGMSIPEIFAEEGEEGF   54 (154)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEECCH--HHH-HHHCCCHHHHHHHCCHHHH
T ss_conf             98998899998899999999997989796859--999-9949999999987493878