HHsearch alignment for GI: 254780271 and conserved domain: cd00464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73 E-value=4.8e-05 Score=55.93 Aligned_cols=54 Identities=31% Similarity=0.475 Sum_probs=40.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 358840733217699999998718531310122111111035563303577887654
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~ 171 (424)
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~--~Ie-~~~g~si~eif~~~Ge~~F 54 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDE--LIE-QRAGMSIPEIFAEEGEEGF 54 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCH--HHH-HHHCCCHHHHHHHCCHHHH
T ss_conf 98998899998899999999997989796859--999-9949999999987493878