HHsearch alignment for GI: 254780271 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.21 E-value=0.076 Score=33.48 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=19.3
Q ss_pred CEEEEECCCCCHHH--HHHHHHHHHCCCEEEHH
Q ss_conf 35884073321769--99999987185313101
Q gi|254780271|r 115 NILLVGPTGCGKTY--LAQTLARIIDVPFTMAD 145 (424)
Q Consensus 115 NILliGPTGvGKTe--lAr~LAk~l~~PF~~vd 145 (424)
T Consensus 1 H~lvig~tGsGKt~~~vip~ll~~-~~s~vv~D 32 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-PGSVVVLD 32 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 979988999973189999999818-99889994