HHsearch alignment for GI: 254780271 and conserved domain: cd01126

>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.21  E-value=0.076  Score=33.48  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             CEEEEECCCCCHHH--HHHHHHHHHCCCEEEHH
Q ss_conf             35884073321769--99999987185313101
Q gi|254780271|r  115 NILLVGPTGCGKTY--LAQTLARIIDVPFTMAD  145 (424)
Q Consensus       115 NILliGPTGvGKTe--lAr~LAk~l~~PF~~vd  145 (424)
T Consensus         1 H~lvig~tGsGKt~~~vip~ll~~-~~s~vv~D   32 (384)
T cd01126           1 HVLVFAPTRSGKGVGFVIPNLLTW-PGSVVVLD   32 (384)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             979988999973189999999818-99889994