HHsearch alignment for GI: 254780271 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.84 E-value=0.013 Score=38.79 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=24.8
Q ss_pred CCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 135522568-358840733217699999998718
Q gi|254780271|r 106 SSNVELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 106 ~~~~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 19 ~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 4588988999999995899988999999869876