HHsearch alignment for GI: 254780271 and conserved domain: cd03229
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.021 Score=37.38 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=22.5
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 22 ~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~~ 51 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999999839999999985999