HHsearch alignment for GI: 254780271 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.13 E-value=0.036 Score=35.80 Aligned_cols=51 Identities=27% Similarity=0.531 Sum_probs=31.5
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH--------HHH-HHHHHCCCCC
Q ss_conf 522568-35884073321769999999871853--131012--------211-1111035563
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADA--------TTL-TEAGYVGEDV 159 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vda--------T~~-TE~GYvG~Dv 159 (424)
T Consensus 24 l~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 86 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 997699999999999998999999982386188518999999923189999974069991589