HHsearch alignment for GI: 254780271 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.052 Score=34.66 Aligned_cols=50 Identities=32% Similarity=0.614 Sum_probs=31.1
Q ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHHH---------HHHHCCCCC
Q ss_conf 2256-835884073321769999999871853--1310122111---------111035563
Q gi|254780271|r 110 ELAK-SNILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTLT---------EAGYVGEDV 159 (424)
Q Consensus 110 ei~~-~NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~T---------E~GYvG~Dv 159 (424)
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 85 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 98799999999899982999999996676678868999999966089999973179993689