HHsearch alignment for GI: 254780271 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.013 Score=38.79 Aligned_cols=29 Identities=24% Similarity=0.644 Sum_probs=22.4
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 46 ~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~ 75 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 888999999998998489999999975999