HHsearch alignment for GI: 254780271 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.016 Score=38.29 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999779999999976999