HHsearch alignment for GI: 254780271 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.16 E-value=7.8e-06 Score=61.41 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCC
Q ss_conf 987899999742030859999999999986588752121013552256835884073321769999999871-----853
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----DVP 140 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----~~P 140 (424)
T Consensus 14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p----~KpL---VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~ 85 (127)
T pfam06309 14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKP----RKPL---VLSFHGWTGTGKNFVAEIIADNLYRDGLRSP 85 (127)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCC----CCCE---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8779999999875347798999999999999748-999----9974---8870189998798999999999875434787
Q ss_pred EEEH
Q ss_conf 1310
Q gi|254780271|r 141 FTMA 144 (424)
Q Consensus 141 F~~v 144 (424)
T Consensus 86 ~Vh~ 89 (127)
T pfam06309 86 YVHH 89 (127)
T ss_pred CEEE
T ss_conf 5688