HHsearch alignment for GI: 254780271 and conserved domain: pfam06309

>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.16  E-value=7.8e-06  Score=61.41  Aligned_cols=71  Identities=24%  Similarity=0.382  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCC
Q ss_conf             987899999742030859999999999986588752121013552256835884073321769999999871-----853
Q gi|254780271|r   66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----DVP  140 (424)
Q Consensus        66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----~~P  140 (424)
T Consensus        14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p----~KpL---VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~   85 (127)
T pfam06309        14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKP----RKPL---VLSFHGWTGTGKNFVAEIIADNLYRDGLRSP   85 (127)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCC----CCCE---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             8779999999875347798999999999999748-999----9974---8870189998798999999999875434787


Q ss_pred             EEEH
Q ss_conf             1310
Q gi|254780271|r  141 FTMA  144 (424)
Q Consensus       141 F~~v  144 (424)
T Consensus        86 ~Vh~   89 (127)
T pfam06309        86 YVHH   89 (127)
T ss_pred             CEEE
T ss_conf             5688