HHsearch alignment for GI: 254780271 and conserved domain: pfam10431
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=98.84 E-value=2.4e-08 Score=79.01 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC---CC
Q ss_conf 105789999874267799999999874498999968999999995510678742368999999677740276789---84
Q gi|254780271|r 316 LDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLK---GV 392 (424)
Q Consensus 316 Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~---~~ 392 (424)
T Consensus 1 L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~ 76 (89)
T pfam10431 1 LSKEELRQIVDL----QLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEG 76 (89)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 988999999999----9999999999789079986899999998356756794789999999999999999984989997
Q ss_pred CEEEECHH
Q ss_conf 19998377
Q gi|254780271|r 393 SSVIISDD 400 (424)
Q Consensus 393 ~~v~Id~~ 400 (424)
T Consensus 77 ~~i~i~~~ 84 (89)
T pfam10431 77 DTVRVDVD 84 (89)
T ss_pred CEEEEEEC
T ss_conf 99999715