HHsearch alignment for GI: 254780271 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.61 E-value=2.2e-07 Score=72.25 Aligned_cols=232 Identities=17% Similarity=0.240 Sum_probs=131.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf 99997420308599999999999865887521210135522568358840733217699999998718531310122111
Q gi|254780271|r 71 ILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLT 150 (424)
Q Consensus 71 I~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~T 150 (424)
T Consensus 197 L~~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS 272 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSS 272 (509)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCC
T ss_conf 9985497323878899999999708876648988504154---1499846998236299999998588606-87344455
Q ss_pred HHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 111035---56330357788765422776542233322333200233333344321025689887531058701025655
Q gi|254780271|r 151 EAGYVG---EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQG 227 (424)
Q Consensus 151 E~GYvG---~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~ 227 (424)
T Consensus 273 ~aGLTaav~rd~~~-ge~~le-a-GALVlAD~GiccIDEfdKm~~--------------~dr~alhEaMEQQtisiaKaG 335 (509)
T smart00350 273 AVGLTAAVTRDPET-REFTLE-G-GALVLADNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAG 335 (509)
T ss_pred CCCCEEEEEECCCC-CCEEEC-C-CCEECCCCCEEEEEEHHHCCH--------------HHHHHHHHHHHHCEEEEECCC
T ss_conf 57706899981788-837872-5-641205675478521320787--------------789999999974877874375
Q ss_pred CCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 64322243024310001232200046789887641234333211110000000168999641056777522068987207
Q gi|254780271|r 228 GRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL 307 (424)
Q Consensus 228 grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl 307 (424)
T Consensus 336 i~~tL~aR~sVlAAaNP---~~g~yd------------------~------~~s---~~--------eni~l~~~LLSRF 377 (509)
T smart00350 336 ITTTLNARCSVLAAANP---IGGRYD------------------P------KLT---PE--------ENIDLPAPILSRF 377 (509)
T ss_pred EEEEEECCCEEEEEECC---CCCCCC------------------C------CCC---HH--------HHCCCCHHHHHHC
T ss_conf 17998557359986556---556378------------------8------899---99--------9468980354102
Q ss_pred CCEEEECC-----CCHHHHHHHHHHH---------------HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH
Q ss_conf 84267211-----1057899998742---------------6779999999987449899996899999999551
Q gi|254780271|r 308 PVLATLED-----LDENSLIRILSEP---------------KNALIKQYQCLFDMEDVELVFHEDALREIARCAI 362 (424)
Q Consensus 308 PiiV~L~~-----Lt~edl~rILtep---------------knsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~ 362 (424)
T Consensus 378 DLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~-~~~P~ls~eA~~~i~~~Y~ 451 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE-KIKPKLSEEAAEKLVKAYV 451 (509)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHH
T ss_conf 3899961589878899999999998741588754556886899999999999986-2899789999999999999