RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780271|ref|YP_003064684.1| ATP-dependent protease
ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str.
psy62]
(424 letters)
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 689 bits (1779), Expect = 0.0
Identities = 286/408 (70%), Positives = 342/408 (83%), Gaps = 2/408 (0%)
Query: 18 SFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSIT-KSHEGIPNPQEILRVLD 76
SFCGKSQHEVRKLIAGP V+ICDEC+ELC DIIREE K ++ K +P P+EI LD
Sbjct: 1 SFCGKSQHEVRKLIAGPGVYICDECIELCNDIIREELKEALDEKELSELPTPKEIKAHLD 60
Query: 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI 136
EYVIGQ QAKKVL+VAV+NHYKRL + + +VEL+KSNILL+GPTG GKT LAQTLA+I
Sbjct: 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKI 120
Query: 137 IDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDN 196
++VPF +ADATTLTEAGYVGEDVENI+LKLLQAADY+VERA+RGI+YIDE+DKI+RKS+N
Sbjct: 121 LNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180
Query: 197 PSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLD 256
PSITRDVSGEGVQQALLKI+EGT+ASVPPQGGRKHPQQEF+QVDT+NILFICGGAFAGL+
Sbjct: 181 PSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLE 240
Query: 257 RIISARGEKASIGFSAVVKDSDN-RPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLED 315
+II R K IGF A VK + GE+L+ +E EDLVKFGLIPEFIGRLPV+ATLE+
Sbjct: 241 KIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300
Query: 316 LDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375
LDE++L++IL+EPKNAL+KQYQ LF+M+ VEL F E+AL+ IA+ AI KTGARGLRSI+
Sbjct: 301 LDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSII 360
Query: 376 EKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423
E++LLD MFELP L+ V V+I+++VV G A PL +Y EK
Sbjct: 361 EELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLLIYASPSKEKPKAK 408
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 442 bits (1137), Expect = e-124
Identities = 214/474 (45%), Positives = 289/474 (60%), Gaps = 69/474 (14%)
Query: 2 SKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKS 61
S A N S+S L C C SQ + FI +C + + + + S
Sbjct: 62 SAAPGNKSLSGGGLQCPKCT-SQCTPLETFVSSQGFILCKCNKSFVVLYEADGAKPGKLS 120
Query: 62 HEG---------IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHS--------- 103
P P+EI LD++V+GQ +AKKVL+VAV+NHYKR+ H+
Sbjct: 121 PSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELA 180
Query: 104 ------------------------------------SKSSNVELAKSNILLVGPTGCGKT 127
+VEL KSN+LL+GPTG GKT
Sbjct: 181 EASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLGPTGSGKT 240
Query: 128 YLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEV 187
LAQTLAR++DVPF + D TTLT+AGYVGEDVE++I KLLQ A+YNVE+AQ+GIV++DEV
Sbjct: 241 LLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300
Query: 188 DKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFI 247
DKI++K+++ +RDVSGEGVQQALLK++EGT+ +VP +G R+ P+ + +Q+DTTNILFI
Sbjct: 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFI 360
Query: 248 CGGAFAGLDRIISARGEKASIGFSAVVK-------------DSDNRPVGEVLRNLESEDL 294
GAF GLD+IIS R + S+GF A ++D E+L +ES DL
Sbjct: 361 ASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDL 420
Query: 295 VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDAL 354
+ FG+IPEF+GR PVL L LDE+ L+R+L+EPKNAL KQY+ LF M++VEL F E AL
Sbjct: 421 ISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKAL 480
Query: 355 REIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACP 408
IA+ A+ KTGARGLRSILE +LL+ MFE+P + +V++ ++ VKG+ P
Sbjct: 481 EAIAQLALKRKTGARGLRSILESLLLEAMFEVPG-SDIKAVLVDEEAVKGEKEP 533
>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 137 bits (346), Expect = 7e-33
Identities = 87/255 (34%), Positives = 118/255 (46%), Gaps = 60/255 (23%)
Query: 165 KLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224
++ Q A E Q GIV+IDE+DKI+++ + DVS EGVQ+ LL ++EG+ S
Sbjct: 239 EIKQEAIDAAE--QNGIVFIDEIDKIAKRGGSGG--PDVSREGVQRDLLPLVEGSTVST- 293
Query: 225 PQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGE 284
++ V T +ILFI GAF V K SD
Sbjct: 294 ----------KYGPVKTDHILFIASGAF-------------------HVAKPSD------ 318
Query: 285 VLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMED 344
LIPE GR P+ L+ L + RIL+EPK +LIKQY+ L E
Sbjct: 319 --------------LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEG 364
Query: 345 VELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISD 399
VEL F +DA++ IA A GAR L ++LE++L D FE P + G V I
Sbjct: 365 VELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSG-QKVTIDA 423
Query: 400 DVVKGKACPLNVYTD 414
+ V+ K L D
Sbjct: 424 EYVEEKLGDLVANED 438
Score = 102 bits (255), Expect = 2e-22
Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKT 127
P+EI+ LD Y+IGQ +AKK +A+A+ N ++R+ + + E+ NIL++GPTG GKT
Sbjct: 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRD-EVTPKNILMIGPTGVGKT 64
Query: 128 YLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA 170
+A+ LA++ PF +AT TE GYVG DVE+II L++ A
Sbjct: 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 71.5 bits (176), Expect = 4e-13
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A+ + PF + L YVGE + + +L +AA +
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS-KYVGESEKRLR-ELFEAA----K 54
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
+ +++IDE+D ++ + D V LL ++G
Sbjct: 55 KLAPCVIFIDEIDALAGSRGSGG---DSESRRVVNQLLTELDG 94
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 69.1 bits (169), Expect = 2e-12
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEAGYVGEDVENIILKLLQA 169
N+LL GP G GKT LA+ +A + PF +A+ L E V E + +++LL
Sbjct: 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78
Query: 170 ADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
E+A+ G+++IDE+D +SR G Q ALL+++E
Sbjct: 79 L---AEKAKPGVLFIDEIDSLSR--------------GAQNALLRVLE 109
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 63.4 bits (154), Expect = 1e-10
Identities = 72/354 (20%), Positives = 133/354 (37%), Gaps = 81/354 (22%)
Query: 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSS-KSSNVELAKSNILLVGPTGCGKTYLAQ 131
R L + VIGQ +A + ++ A+ R A + N + + L +GPTG GKT LA+
Sbjct: 487 RRLKKRVIGQDEAVEAVSDAI-----RRARAGLGDPNRPIG--SFLFLGPTGVGKTELAK 539
Query: 132 TLARIIDVP------FTMA---DATTLTEA-----GYVGEDVENIILKLLQAADYNVERA 177
LA + M+ + +++ GYVG + + + V R
Sbjct: 540 ALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRK 592
Query: 178 QRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME-GTIASVPPQGGRKHPQQEF 236
++ +DE++K V LL++++ G + GR
Sbjct: 593 PYSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTD---GQGRT------ 629
Query: 237 LQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDN--RPVGEVLRNLESEDL 294
VD N + I ++ G +++D+D E L+ E+L
Sbjct: 630 --VDFRNTIIIM----------------TSNAGSEEILRDADGDDFADKEALKEAVMEEL 671
Query: 295 VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDAL 354
K PEF+ R+ + L + L RI+ + + + L ++A
Sbjct: 672 KKH-FRPEFLNRIDEIIPFNPLSKEVLERIVD----LQLNRLAKRLAERGITLELSDEAK 726
Query: 355 REIARCAIAHKTGARGLRSILEKILLDTMFEL---PMLKGVSSVIISDDVVKGK 405
+A + GAR LR +++ + D + + ++ +V + D K K
Sbjct: 727 DFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDVDDEKIK 780
Score = 43.0 bits (101), Expect = 2e-04
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT--------EAGYVGEDVEN 161
K+N +LVG G GKT + + LA+ I DVP ++ D + A Y GE E
Sbjct: 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE-FEE 249
Query: 162 IILKLLQAADYNVERAQRGIVYIDEVDKI 190
+ +L+ VE+++ I++IDE+ I
Sbjct: 250 RLKAVLKE----VEKSKNVILFIDEIHTI 274
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 61.3 bits (148), Expect = 5e-10
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 36/186 (19%)
Query: 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKT 127
+I L++ V+G + ++ +A+ LA ++LL GP G GKT
Sbjct: 15 LGKIRSELEKVVVGDEEVIELALLAL-----------------LAGGHVLLEGPPGVGKT 57
Query: 128 YLAQTLARIIDVPFTMADAT-TLTEAGYVGEDVENIILKLLQAA---DYNVERAQRGIVY 183
LA+ LAR + +PF T L + +G +L + A R I+
Sbjct: 58 LLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILL 117
Query: 184 IDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTN 243
+DE+++ + VQ ALL+ +E +VP + P F+ + T N
Sbjct: 118 LDEINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPP-FIVIATQN 162
Query: 244 ILFICG 249
G
Sbjct: 163 PGEYEG 168
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 57.5 bits (138), Expect = 7e-09
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A F + L + +VGE +NI +A
Sbjct: 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL-SKWVGESEKNIRELFEKA-----R 332
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
+ I++IDE+D ++ + D SG V LL ++G
Sbjct: 333 KLAPSIIFIDEIDSLASGR---GPSEDGSGRRVVGQLLTELDG 372
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 56.1 bits (135), Expect = 2e-08
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 49 IIREENKSSITKSHEGI---PNPQEILR------VLDEYVIGQGQAKKVLAVAVHNHYKR 99
+IR + I P+E R LD+ VIGQ +AK+ + + +
Sbjct: 85 VIRVVPSGGGIITSTTIFVLETPREEDREIISDITLDD-VIGQEEAKRKCRLIM----EY 139
Query: 100 LAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV 159
L + + + A N+L GP G GKT +A+ LA VP + AT L +VG+
Sbjct: 140 LENPERFG--DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI-GEHVGDGA 196
Query: 160 ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219
I +L + A +A IV+IDE+D I+ + DVS + ALL ++G
Sbjct: 197 RR-IHELYERA----RKAAPCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGI 249
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 55.4 bits (133), Expect = 3e-08
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP GCGKT LA +A + VPF A + +G GE + I QA
Sbjct: 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGESEKKIRELFDQAK----- 279
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
IV+IDE+D I+ K + R++ V Q LL M+
Sbjct: 280 SNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQ-LLTSMDE 319
Score = 37.3 bits (86), Expect = 0.009
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171
A S +LL GP GCGKT LA+ +A F L YVGE E + ++ Q A
Sbjct: 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK-YVGES-ERAVRQVFQRAR 601
Query: 172 YNVERAQRGIVYIDEVDKI-SRKSDNPSITRDVSGEGVQQALLKIMEG 218
+ +++ DE+D + R+SD S V LL ++G
Sbjct: 602 ASAP----CVIFFDEIDALVPRRSDEGS----SVSSRVVNQLLTELDG 641
>gnl|CDD|35950 KOG0731, KOG0731, KOG0731, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 774
Score = 46.6 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LLVGP G GKT LA+ +A VPF + E +VG + L A N
Sbjct: 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE-MFVGVGASR-VRDLFPLARKNAP 404
Query: 176 RAQRGIVYIDEVDKISRK 193
I++IDE+D + RK
Sbjct: 405 S----IIFIDEIDAVGRK 418
>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 752
Score = 46.6 bits (110), Expect = 1e-05
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 22 KSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIG 81
K+ V+ + ++ + ++ T + +P+++ V E V G
Sbjct: 249 KAGRLVKTIRTTIVGYLLLLGIYALLENTGLSGIFRSTTGLDSEVDPEQMKNVTFEDVKG 308
Query: 82 QGQAKKVLAVAVH-----NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI 136
+AK+ L V + RL +L K +LLVGP G GKT LA+ +A
Sbjct: 309 VDEAKQELEEIVEFLKDPTKFTRLGG-------KLPKG-VLLVGPPGTGKTLLARAVAGE 360
Query: 137 IDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDN 196
VPF A + E +VG + L AA I++IDE+D + K +
Sbjct: 361 AGVPFFYASGSEFDEM-FVGVGARR-VRDLFAAAKARAP----CIIFIDEIDAVGGKRNP 414
Query: 197 PSI 199
Sbjct: 415 SDQ 417
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 46.4 bits (110), Expect = 1e-05
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 173
+++L GP G GKT LA+ +A + F A T +D+ II + A N
Sbjct: 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV-----KDLREII----EEARKN 99
Query: 174 VERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME-GTI 220
+R I+++DE+ + ++ Q ALL +E GTI
Sbjct: 100 RLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVENGTI 133
>gnl|CDD|147593 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus.
The RuvB protein makes up part of the RuvABC revolvasome
which catalyses the resolution of Holliday junctions
that arise during genetic recombination and DNA repair.
Branch migration is catalysed by the RuvB protein that
is targeted to the Holliday junction by the structure
specific RuvA protein. This family contains the
N-terminal region of the protein.
Length = 234
Score = 44.4 bits (106), Expect = 7e-05
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 33/124 (26%)
Query: 73 RVLDEYVIGQGQAKKVLAVAVHNHYKR---LAHSSKSSNVELAKSNILLVGPTGCGKTYL 129
R LDEY IGQ + K+ L + + KR L H +LL GP G GKT L
Sbjct: 21 RRLDEY-IGQEKVKENLKIFIEAAKKRGEALDH-------------VLLYGPPGLGKTTL 66
Query: 130 AQTLARIIDVPFTMADATTLTEAG-YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVD 188
A +A + V + L + G IL L+ D +++IDE+
Sbjct: 67 ANIIANEMGVNIRITSGPALEKPGDLAA------ILTNLEPGD---------VLFIDEIH 111
Query: 189 KISR 192
+++R
Sbjct: 112 RLNR 115
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 44.0 bits (104), Expect = 8e-05
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 25/120 (20%)
Query: 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQT 132
+ LDE+ IGQ + K+ L + + ++K L ++LL GP G GKT LA
Sbjct: 23 KTLDEF-IGQEKVKEQLQIFIK--------AAKKRGEAL--DHVLLFGPPGLGKTTLAHI 71
Query: 133 LARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISR 192
+A + V + L + G D+ IL L+ D +++IDE+ ++S
Sbjct: 72 IANELGVNLKITSGPALEKPG----DLAA-ILTNLEEGD---------VLFIDEIHRLSP 117
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 43.9 bits (103), Expect = 9e-05
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADY 172
++ ILL GP GCGKT LA +A ++ F L + Y+G +N+ +A
Sbjct: 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL-SKYIGASEQNVRDLFERAQS- 758
Query: 173 NVERAQRGIVYIDEVDKIS--RKSDNPSITRDVSGEGVQQALLKIMEG 218
A+ I++ DE D I+ R D+ +T V V Q LL ++G
Sbjct: 759 ----AKPCILFFDEFDSIAPKRGHDSTGVTDRV----VNQ-LLTELDG 797
Score = 37.3 bits (86), Expect = 0.009
Identities = 34/142 (23%), Positives = 48/142 (33%), Gaps = 19/142 (13%)
Query: 68 PQEILRVLD---EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVE------LAKSNILL 118
P EI D + G + L ++ H S K N NILL
Sbjct: 377 PLEIKITSDVNLPVLAGIKENSPDLVMSPFEHDFIQVPSYKKENANQELSPVFRHGNILL 436
Query: 119 VGPTGCGKTYLAQTLARIIDVP----FTMADATTLTEAGYVGEDVENIILKLLQAADYNV 174
GP G GKT L + L + +TL G +E I K L
Sbjct: 437 NGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD-----GSSLEK-IQKFLNNVFSEA 490
Query: 175 ERAQRGIVYIDEVDKISRKSDN 196
I+ +D++D ++ S N
Sbjct: 491 LWYAPSIIVLDDLDCLASASSN 512
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 43.7 bits (103), Expect = 1e-04
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 173
ILL GP G GKT LA+ +A+ F + LT + GE KL++A
Sbjct: 128 KGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF-GEA-----QKLVKAVFSL 181
Query: 174 VERAQRGIVYIDEVDK--ISRKSDNPSITR 201
+ Q I++IDEVD R+S + T
Sbjct: 182 ASKLQPSIIFIDEVDSFLGQRRSTDHEATA 211
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 41.9 bits (98), Expect = 4e-04
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 173
ILL GP G GK+YLA+ +A + F ++ L + ++GE E ++ L + A N
Sbjct: 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKNLFEMAREN 224
Query: 174 VERAQRGIVYIDEVDKI-SRKSDNPS 198
+ I++IDE+D + +S+N S
Sbjct: 225 ----KPSIIFIDEIDSLCGSRSENES 246
>gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 744
Score = 41.1 bits (96), Expect = 6e-04
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDV--PFTMADATTLTEAGYVGEDVENIILKLLQAA--D 171
ILL GP G GKT +A+ + ++++ P + L + YVGE EN + KL A +
Sbjct: 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK--YVGESEEN-VRKLFADAEEE 315
Query: 172 YNVERAQRG--IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215
A G I+ DE+D I ++ + + + V V Q L K+
Sbjct: 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKM 361
Score = 31.1 bits (70), Expect = 0.56
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPF 141
++LL GP G GKT LA +A D PF
Sbjct: 539 VSVLLEGPPGSGKTALAAKIALSSDFPF 566
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 40.7 bits (95), Expect = 8e-04
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+L+VGP G GKT LA+ +A F ++TLT + + GE E ++ L + A +
Sbjct: 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARFYAP 305
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
++IDE+D + + S + V+ LL M+G
Sbjct: 306 ----STIFIDEIDSLCSQRGGSS--EHEASRRVKSELLVQMDG 342
>gnl|CDD|35959 KOG0740, KOG0740, KOG0740, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 428
Score = 40.4 bits (94), Expect = 0.001
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A F A++LT + YVGE KL++A
Sbjct: 189 LLLFGPPGTGKTMLAKAIATESGATFFNISASSLT-SKYVGE-----SEKLVRALFKVAR 242
Query: 176 RAQRGIVYIDEVDKI-SRKSDN 196
Q +++IDE+D + S++SDN
Sbjct: 243 SLQPSVIFIDEIDSLLSKRSDN 264
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling inter-
mediates into the (bacterio)chlorophyll branch in
response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 40.6 bits (96), Expect = 0.001
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 23/61 (37%)
Query: 79 VIGQGQAKKVLAVAV---HNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLAR 135
V GQ QAK+ L +A HN +L++GP G GKT LA+ L
Sbjct: 5 VKGQEQAKRALEIAAAGGHN--------------------LLMIGPPGSGKTMLAKRLPG 44
Query: 136 I 136
I
Sbjct: 45 I 45
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 40.0 bits (93), Expect = 0.001
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A F + + Y+GE ++ + + A N
Sbjct: 192 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGEG-PRMVRDVFRLAKENAP 249
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
I++IDE+D I+ K + D + + LL M+G
Sbjct: 250 ----SIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related
ATP-dependent Clp proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 898
Score = 39.6 bits (92), Expect = 0.002
Identities = 64/329 (19%), Positives = 125/329 (37%), Gaps = 66/329 (20%)
Query: 71 ILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLA 130
+ L E VIGQ +A +A A+ +R K N + L +GP G GKT LA
Sbjct: 556 LEERLHERVIGQDEAVAAIAAAI----RRSRAGLKDPNPDAW---FLFLGPDGVGKTELA 608
Query: 131 QTLARI----------IDVPFTMADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQR 179
+ LA +D+ + + + GYVG++ + + ++ Y+V
Sbjct: 609 KALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSV----- 663
Query: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME-GTIASVPPQGGRKHPQQEFLQ 238
V +E++K + V LL++++ G + GR +
Sbjct: 664 --VLFEEIEK--------------AHPDVLNILLQLLDRGRLTD---SHGR--------E 696
Query: 239 VDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFG 298
VD N +FI + + + + D D + L+ ++ D V+
Sbjct: 697 VDFKNAIFI-------MTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIY 749
Query: 299 LI----PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDAL 354
EF+ R+ L LD + LI I+++ + K+ + ++ L+ +
Sbjct: 750 NKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEE----RELLLLVTDRVD 805
Query: 355 REIARCAIAHKTGARGLRSILEKILLDTM 383
++ GAR ++ +E+ + +
Sbjct: 806 DKVLFKGYDFDYGARPIKRSIEERFENRL 834
>gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex,
ATPase RPT4 [Posttranslational modification, protein
turnover, chaperones].
Length = 388
Score = 39.2 bits (91), Expect = 0.002
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A + V F ++ L Y+GE +L++
Sbjct: 169 LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL-VDKYIGESA-----RLIRDMFRYAR 222
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG--TIASVP 224
I+++DE+D I + + + D + LL M+G T+ V
Sbjct: 223 EVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVK 273
>gnl|CDD|31415 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 38.7 bits (90), Expect = 0.003
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A D F + L + Y+GE ++ +L + A E
Sbjct: 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGEGAR-LVRELFELAR---E 242
Query: 176 RAQRGIVYIDEVDKI--SRKSDNPSITRDV 203
+A I++IDE+D I R S R+V
Sbjct: 243 KAP-SIIFIDEIDAIGAKRFDSGTSGDREV 271
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 38.0 bits (88), Expect = 0.005
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 174
N+++ GP G GKT LAR + L + G DV +K+ +
Sbjct: 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTL 109
Query: 175 ERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
+ I+ +DE D ++ G QQAL + ME
Sbjct: 110 PPGRHKIIILDEADSMT--------------AGAQQALRRTME 138
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 37.7 bits (87), Expect = 0.006
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADY 172
+S ILL GP G GKT LA+ +A + F L YVG+ EN + ++ + A
Sbjct: 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YVGQSEEN-VREVFERA-- 760
Query: 173 NVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215
A +++ DE+D ++ + V V Q L ++
Sbjct: 761 --RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801
Score = 30.3 bits (68), Expect = 1.1
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT + + +A + + D L + LQA
Sbjct: 434 VLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE------SASHTETKLQAIFSRAR 487
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITR 201
R ++++ +D + D R
Sbjct: 488 RCSPAVLFLRNLDVLGIDQDGGEDAR 513
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 37.7 bits (87), Expect = 0.006
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 174
+++L GP G GKT LA+ +A + T A DV +I QA +
Sbjct: 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT--NDVRDIF---EQAQNEKS 218
Query: 175 ERAQRGIVYIDEVDKISR 192
++ I++IDE+ + ++
Sbjct: 219 LTKRKTILFIDEIHRFNK 236
>gnl|CDD|35699 KOG0478, KOG0478, KOG0478, DNA replication licensing factor, MCM4
component [Replication, recombination and repair].
Length = 804
Score = 37.3 bits (86), Expect = 0.009
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG---YVGEDVENIILKLLQ 168
NILLVG G K+ L Q R++ + G YV +D + +L+
Sbjct: 461 GDINILLVGDPGTSKSQLLQYCHRLLP-RGVYTSGKGSSAVGLTAYVTKDPDT--RQLVL 517
Query: 169 AADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME-GTIASVPPQ 226
+ V + GI IDE DK+S TR V E ++Q L I + G IAS+ +
Sbjct: 518 ESGALV-LSDNGICCIDEFDKMSDS------TRSVLHEVMEQQTLSIAKAGIIASLNAR 569
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 37.0 bits (86), Expect = 0.009
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE--AGYVGEDVENIILKLLQAADYN 173
+LLVGP G GKT LA+ +A +VPF + E G V ++ K + +
Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPC- 277
Query: 174 VERAQRGIVYIDEVDKISRK 193
IV+IDE+D + R+
Sbjct: 278 -------IVFIDEIDAVGRQ 290
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 37.2 bits (86), Expect = 0.010
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP GCGKT LA+ LA + F L YVGE E I ++ + A
Sbjct: 471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-ERAIREVFRKA----R 524
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
+ I++ DE+D ++ S + V LL M+G
Sbjct: 525 QVAPCIIFFDEIDALAGSRGGSSSG---VTDRVLSQLLTEMDG 564
Score = 36.5 bits (84), Expect = 0.013
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 173
+LL GP G GKT+L + +A + + L + + GE N + K A
Sbjct: 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELI-SKFPGETESN-LRKAFAEAL-- 274
Query: 174 VERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218
+ I++IDE+D + K + DV V Q LL +++G
Sbjct: 275 -KFQVPSIIFIDELDALCPKREG---ADDVESRVVSQ-LLTLLDG 314
>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 36.8 bits (85), Expect = 0.011
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LLVGP G GKT LA+ +A VPF + E +VG + QA +
Sbjct: 186 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFEQA-----K 239
Query: 176 RAQRGIVYIDEVDKISRK 193
+ I++IDE+D + R+
Sbjct: 240 KNAPCIIFIDEIDAVGRQ 257
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 36.4 bits (84), Expect = 0.015
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146
I++ GPT GKT LA LA+ + D+
Sbjct: 6 IVIAGPTASGKTALAIALAKRLGGEIISLDS 36
>gnl|CDD|35698 KOG0477, KOG0477, KOG0477, DNA replication licensing factor, MCM2
component [Replication, recombination and repair].
Length = 854
Score = 36.1 bits (83), Expect = 0.019
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 44 ELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHS 103
+ +D + +E+ I + + P + I+ + + G K+ +A+A+ + + +
Sbjct: 416 KFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALAL---FGGVPKN 472
Query: 104 SKSSNVELAKSNILLVGPTGCGKT----YLAQTLARIIDVPFTMADATTLTEAGYVGEDV 159
+ N+LL+G G K+ Y +T R + FT + G
Sbjct: 473 PGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAV---FTTGQGAS--AVGLTAYVR 527
Query: 160 ENIILK--LLQAADYNVERAQRGIVYIDEVDKISRKSDNPSI-------TRDVSGEGVQQ 210
++ + + L+A + A +G+ IDE DK+ D SI + +S G+
Sbjct: 528 KDPVTREWTLEAGALVL--ADKGVCLIDEFDKM-NDQDRTSIHEAMEQQSISISKAGI-V 583
Query: 211 ALLKIMEGTIASVPPQGGRKHPQQEFLQ 238
L+ IA+ P GGR +P F Q
Sbjct: 584 TSLQARCTVIAAANPIGGRYNPSLTFAQ 611
>gnl|CDD|177027 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 35.8 bits (83), Expect = 0.021
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 48 DIIREENKSSITKSHEGIPNPQ----------EILRVLDEYVIGQGQAKKVLAVAVHNHY 97
++ EE+ + I + GIP + + L + +IGQ +A VAV
Sbjct: 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEA----VVAVSKAI 525
Query: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLA 134
+R K+ N +A + L GPTG GKT L + LA
Sbjct: 526 RRARVGLKNPNRPIA--SFLFSGPTGVGKTELTKALA 560
Score = 35.8 bits (83), Expect = 0.023
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMAD--------ATTLTEAGYVGEDVEN 161
K+N +L+G G GKT +A+ LA+ I DVP + D L Y GE E
Sbjct: 200 KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEER 259
Query: 162 I--ILKLLQAADYNVERAQRGIVYIDEV 187
+ I +Q + N+ I+ IDEV
Sbjct: 260 LKRIFDEIQENN-NI------ILVIDEV 280
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 35.8 bits (82), Expect = 0.025
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 44/155 (28%)
Query: 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLAR--- 135
V+GQ K L+ A+ N R+AH+ L GP G GKT +A+ LA+
Sbjct: 18 VVGQEHVVKTLSNALEN--GRIAHA------------YLFSGPRGVGKTTIARILAKALN 63
Query: 136 ----IIDVPFTMADATTLTEAGYVGEDVE---------NIILKLLQAADYNVERAQRGIV 182
P + G + + +E + I ++++ +Y + +
Sbjct: 64 CENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVY 123
Query: 183 YIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
IDEV +S+++ N ALLK +E
Sbjct: 124 IIDEVHMLSKQAFN--------------ALLKTLE 144
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 35.6 bits (82), Expect = 0.026
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 174
NI+L+G G GKT + + LA+ + +PF D L E G + I + + +
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV--DLDELIEQ-RAGMSIPEIFAEEGEEGFREL 57
Query: 175 ER 176
ER
Sbjct: 58 ER 59
>gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex,
ATPase RPT1 [Posttranslational modification, protein
turnover, chaperones].
Length = 435
Score = 35.7 bits (82), Expect = 0.027
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT A+ +A D F + L + YVGE ++ +L + A
Sbjct: 214 VLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEGAR-MVRELFEMA----- 266
Query: 176 RAQRG-IVYIDEVDKI 190
R ++ I++ DE+D I
Sbjct: 267 RTKKACIIFFDEIDAI 282
>gnl|CDD|31417 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 35.6 bits (82), Expect = 0.029
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII- 137
++GQ +A++ V V ++ K +A IL+VGP G GKT LA +AR +
Sbjct: 41 LVGQEEAREAAGVIV-----KMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELG 90
Query: 138 -DVPFT 142
DVPF
Sbjct: 91 EDVPFV 96
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 35.3 bits (82), Expect = 0.032
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 116 ILLVGPTGCGKTYLAQTLARII 137
I L GP GCGK+ LA+ LAR +
Sbjct: 1 IWLYGPPGCGKSTLAKYLARAL 22
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 35.1 bits (81), Expect = 0.037
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT-MADATTLTEA-------GYVGEDVEN 161
+L + LVGP G GKT L +++A+ + F ++ EA Y+G
Sbjct: 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGK 406
Query: 162 IILKLLQAADYNVERAQRGIVYIDEVDKISR 192
II + +A N + +DE+DK+
Sbjct: 407 IIQGMKKAGVKN------PVFLLDEIDKMGS 431
Score = 28.6 bits (64), Expect = 3.7
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 329 KNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPM 388
K LI + ++ EL ++A+++I R + G R L + KI ++ +
Sbjct: 505 KRHLIPKQLKEHGLKKGELTITDEAIKDIIR-YYTREAGVRNLEREIAKICRKAAKKILL 563
Query: 389 LKGVSSVIISDDVVK 403
K S V I + +K
Sbjct: 564 KKEKSIVKIDEKNLK 578
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 35.2 bits (81), Expect = 0.040
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 30 LIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVL 89
LI G V+ E+ + + + + I E I + D V GQ QAK+ L
Sbjct: 135 LIGGLPVYGARYLEEVV-NFLEGKLRLPIPIPSEVIESFSLAPDFKD--VKGQEQAKRAL 191
Query: 90 AVAVH-NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137
+A H N+LLVGP G GKT LA L ++
Sbjct: 192 EIAAAGGH------------------NLLLVGPPGTGKTMLASRLPGLL 222
>gnl|CDD|35945 KOG0726, KOG0726, KOG0726, 26S proteasome regulatory complex,
ATPase RPT2 [Posttranslational modification, protein
turnover, chaperones].
Length = 440
Score = 34.9 bits (80), Expect = 0.041
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
++L G G GKT LA+ +A F + L + Y+G D ++ +L + A+ +
Sbjct: 222 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLG-DGPKLVRELFRVAEEHAP 279
Query: 176 RAQRGIVYIDEVDKISRK 193
IV+IDE+D I K
Sbjct: 280 ----SIVFIDEIDAIGTK 293
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 34.6 bits (79), Expect = 0.052
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 115 NILLVGPTGCGKTYLAQTL----ARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA 170
+L++G TG GK A+ + AR + PF + +E ++ A
Sbjct: 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL-QEAELFGHEKGAFTGA 161
Query: 171 DYN----VERAQRGIVYIDEV 187
E+A G +++DE+
Sbjct: 162 QGGKAGLFEQANGGTLFLDEI 182
>gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex,
ATPase RPT5 [Posttranslational modification, protein
turnover, chaperones].
Length = 424
Score = 34.6 bits (79), Expect = 0.055
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 100 LAHSSKSSNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGED 158
+ H K N+ + +L+ GP G GKT +A+ A + F L + ++G+
Sbjct: 191 MTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGDG 249
Query: 159 VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216
KL++ A + I++IDE+D I K + D VQ+ +L+++
Sbjct: 250 A-----KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELL 299
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 34.4 bits (79), Expect = 0.060
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146
NI+L+G G GK+ + + LA+ +++PF D
Sbjct: 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 33.9 bits (77), Expect = 0.091
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 88 VLAVAVHNHYKRLAHSSKSSNVELAKS---NILLVGPTGCGKTYLAQTLARIIDVPFTMA 144
+L ++ + LA ++ +N + ++ NIL GP G GKT A+ LAR + + +
Sbjct: 358 ILHPSLEKRIEDLAIAT--ANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAI- 414
Query: 145 DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG-IVYIDEVDKISRKSDNPSITRD 202
T + +G I KL A ++++RG +++IDE D + + ++
Sbjct: 415 --MTGGDVAPLGAQAVTKIHKLFDWA----KKSRRGLLLFIDEADAFLCERNKTYMSEA 467
>gnl|CDD|35947 KOG0728, KOG0728, KOG0728, 26S proteasome regulatory complex,
ATPase RPT6 [Posttranslational modification, protein
turnover, chaperones].
Length = 404
Score = 33.4 bits (76), Expect = 0.12
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LL GP G GKT LA+ +A D F + L + Y+GE + + A ++
Sbjct: 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEGSRMVRELFVMAREH--- 239
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEG----VQQALLKIM 216
I+++DE+D I +R SG G VQ+ +L+++
Sbjct: 240 --APSIIFMDEIDSIGS-------SRVESGSGGDSEVQRTMLELL 275
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 33.4 bits (77), Expect = 0.13
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLAR 135
N+LL+GP G GKT+LA L
Sbjct: 46 QAENLLLLGPPGVGKTHLACALGH 69
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 33.4 bits (76), Expect = 0.13
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 109 VELAKSNILLVGPTGCGKTYLAQTLARII 137
+ N L++GP GKT L + +AR++
Sbjct: 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLL 161
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 33.4 bits (77), Expect = 0.13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 116 ILLVGPTGCGKTYLAQTLARII 137
++L G G GKT L Q LA +
Sbjct: 3 VILQGEAGSGKTTLLQKLALLW 24
>gnl|CDD|36646 KOG1433, KOG1433, KOG1433, DNA repair protein RAD51/RHP55
[Replication, recombination and repair].
Length = 326
Score = 33.1 bits (75), Expect = 0.13
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 117 LLVGPTGCGKTYLAQTLAR----------IIDVPFTMADATTLTEAGYVGEDVENIILKL 166
LVGP G GKT L TLA ID T AG G + + L
Sbjct: 115 ELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLRGRDTLSNL 174
Query: 167 LQAADYNVERAQRGIV 182
+ A YN++ + I
Sbjct: 175 MLARAYNLDHQLQLIQ 190
>gnl|CDD|37381 KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfamily [General
function prediction only].
Length = 344
Score = 32.6 bits (74), Expect = 0.20
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCG 125
+ + + L + GQ AK+++ A+ +H+ + K L S G TG G
Sbjct: 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHW-ANPNPRKP----LVLS---FHGWTGTG 122
Query: 126 KTYLAQTLARIIDVPFTMADATTLTEAGYVG-------EDVENIILKLLQAADYNVERAQ 178
K Y+A+ +A + + +V +E+ +L V+ Q
Sbjct: 123 KNYVAEIIAENLYRGGLRSPFVHH----FVATLHFPHASKIEDYKEELKNRVRGTVQACQ 178
Query: 179 RGIVYIDEVDKISR 192
R + DEVDK+
Sbjct: 179 RSLFIFDEVDKLPP 192
>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 32.7 bits (74), Expect = 0.21
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 109 VELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQ 168
++L IL++GP GKT L + L + + +D+ ++LL
Sbjct: 33 LDLRPFIILILGPRQVGKTTLLKLLIKGLLEEI----------IYINFDDLRLDRIELLD 82
Query: 169 AADYNVERAQRGIVYI--DEVDKI 190
+E +R YI DE+ +
Sbjct: 83 LLRAYIELKEREKSYIFLDEIQNV 106
>gnl|CDD|38557 KOG3347, KOG3347, KOG3347, Predicted nucleotide kinase/nuclear
protein involved oxidative stress response [Nucleotide
transport and metabolism].
Length = 176
Score = 32.5 bits (74), Expect = 0.22
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 107 SNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPF 141
+ E + NIL+ G G GK+ LA+ LA + +
Sbjct: 1 AEPERERPNILVTGTPGTGKSTLAERLAEKTGLEY 35
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 32.6 bits (74), Expect = 0.23
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 34/143 (23%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG--------YVGEDVENII--LK 165
+ VGP G GKT +A+++AR ++ F +T+ YVG II LK
Sbjct: 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLK 500
Query: 166 LLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPP 225
++ + ++ IDEVDK+ D + ALL++++ P
Sbjct: 501 KVKTEN--------PLILIDEVDKLGS-----GHQGDPAS-----ALLELLD------PE 536
Query: 226 QGGRKHPQQEFLQVDTTNILFIC 248
Q + VD + +LFIC
Sbjct: 537 QNANFLDHYLDVPVDLSKVLFIC 559
>gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein
and predicted ATPase that is induced by phosphate
starvation.
Length = 205
Score = 32.4 bits (75), Expect = 0.23
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 109 VELAKSN--ILLVGPTGCGKTYLAQTLA 134
VE + N + +GP G GKTYLA A
Sbjct: 13 VEAIRKNDIVFGIGPAGTGKTYLAVAAA 40
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 32.5 bits (74), Expect = 0.25
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTY 128
E+ + + +G+G KK AV + + + L LVG +GCGK+
Sbjct: 6 EVKNLKKYFPVGKGFGKKRYVKAVDG-----------VSFSIKEGETLGLVGESGCGKST 54
Query: 129 LAQTLARIID 138
L + + + +
Sbjct: 55 LGRLILGLEE 64
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 32.2 bits (73), Expect = 0.26
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 115 NILLVGPTGCGKTYLAQTLARIIDVP 140
IL++GP G GK+ LA+ LA+ + +P
Sbjct: 2 RILILGPPGAGKSTLAKKLAKKLGLP 27
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 32.1 bits (73), Expect = 0.29
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDV 139
+ ++G +G GK+ L Q LA D
Sbjct: 367 VAILGRSGSGKSTLLQLLAGAWDP 390
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 32.1 bits (73), Expect = 0.31
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 118 LVGPTGCGKTYLAQTLARIIDV 139
L+GP+GCGK+ L + L R+ D+
Sbjct: 31 LIGPSGCGKSTLLRLLNRLNDL 52
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 32.1 bits (73), Expect = 0.33
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVH--------NHYKRLAHSSKSSNVELAKSNIL 117
++I+R+ + V ++ + + + +L + L
Sbjct: 261 LGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETL 320
Query: 118 -LVGPTGCGKTYLAQTLARII 137
LVG +G GK+ LA+ LA ++
Sbjct: 321 GLVGESGSGKSTLARILAGLL 341
Score = 29.4 bits (66), Expect = 1.9
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 89 LAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138
L V + + + E+ IL +VG +G GK+ LA L ++
Sbjct: 11 LTVEFA-TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
>gnl|CDD|33396 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 31.9 bits (72), Expect = 0.33
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 97 YKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATT 148
+ L E N+LL+G TG GK+ L L + + T
Sbjct: 23 ERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGT 74
>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 32.0 bits (74), Expect = 0.34
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 15/56 (26%)
Query: 79 VIGQGQA-KKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL 133
+IG+ A ++VL +A KR+A + + +L+ G +G GK A+ +
Sbjct: 1 LIGESPAMQEVLELA-----KRVAPTD---------ATVLITGESGTGKELFARAI 42
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 31.8 bits (73), Expect = 0.34
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 115 NILLVGPTGCGKTYLAQTL---ARIIDVPFTMADATTLT 150
NI LVG +G GKT LA+ L ID ++ D TT++
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVS 39
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 31.7 bits (72), Expect = 0.36
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVP 140
+ EL K IL +VG +G GK+ LA+ + ++ P
Sbjct: 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 31.9 bits (73), Expect = 0.37
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDV 139
+ +VGP+G GK+ L + L R+ D
Sbjct: 31 VAIVGPSGSGKSTLLKLLLRLYDP 54
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 31.7 bits (72), Expect = 0.39
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTG 123
+P PQ L V GQ K +L K + L L ++GP+G
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKPIL---------------KGISFALQAGEALGIIGPSG 372
Query: 124 CGKTYLAQTLARII 137
GK+ LA+ L I
Sbjct: 373 SGKSTLARLLVGIW 386
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 31.7 bits (72), Expect = 0.39
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV---GEDVENIILKLLQ 168
+ + LVGP+G GK+ L Q LAR D +G V GED+ N+ LK L+
Sbjct: 378 SGQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWLR 426
Score = 28.3 bits (63), Expect = 4.6
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 22/68 (32%)
Query: 118 LVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV---GEDVENIILKLLQAADYNV 174
LVGP+G GK+ + L R D AG V G D++++ LK L
Sbjct: 1021 LVGPSGSGKSTVISLLERFYDPD-----------AGKVKIDGVDIKDLNLKWL------- 1062
Query: 175 ERAQRGIV 182
R Q G+V
Sbjct: 1063 -RKQIGLV 1069
>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 31.5 bits (71), Expect = 0.43
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 91 VAVHNH-YKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARI 136
+A+H + H K+ +E K ILL+ GP+GCGK+ + L++
Sbjct: 21 LAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKE 68
>gnl|CDD|73174 COG0470, HolB, ATPase involved in DNA replication [DNA replication,
recombination, and repair].
Length = 325
Score = 31.5 bits (70), Expect = 0.43
Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 48/162 (29%)
Query: 76 DEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLAR 135
DE V Q K++L A+ RL H +L GP G GKT A LA+
Sbjct: 1 DELVPWQEAVKRLLVQALE--SGRLPH------------ALLFYGPPGVGKTTAALALAK 46
Query: 136 II-------DVPFTMADATTLTEAG-------------YVGEDVENIILKLLQAADYNVE 175
+ +P + L AG + + + +L + +
Sbjct: 47 ELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
+V IDE DK++ E ALLK +E
Sbjct: 107 EGGYKVVIIDEADKLT--------------EDAANALLKTLE 134
>gnl|CDD|147155 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 103
Score = 31.4 bits (72), Expect = 0.44
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 111 LAKSNILLVGPTGCGKTYLAQTLARII 137
L K L+V TG GKT A L +
Sbjct: 16 LEKKRGLIVMATGSGKTLTAAKLIARL 42
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 31.4 bits (71), Expect = 0.44
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 93 VHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLA 134
V+ K H+ + ++E+ + L +VG +G GK+ LA+ LA
Sbjct: 12 VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54
>gnl|CDD|32595 COG2603, COG2603, Predicted ATPase [General function prediction
only].
Length = 334
Score = 31.5 bits (71), Expect = 0.44
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVP 140
E+A+ + +L G TGCGKT L + L ID+
Sbjct: 137 EIAQKDFILCGCTGCGKTELVEQLPNAIDLE 167
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 31.4 bits (71), Expect = 0.46
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 105 KSSNVELAKSNIL-LVGPTGCGKTYLAQTLARII 137
K N+++ + L+GP+GCGK+ TL R+I
Sbjct: 20 KDVNLDIEDGEFVVLLGPSGCGKS----TLLRMI 49
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 31.4 bits (71), Expect = 0.50
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146
I+++G +G GK+ + + LA + PF D
Sbjct: 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 31.3 bits (71), Expect = 0.58
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 102 HSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIIDV 139
H+ K N+++ K+ + L+GP+GCGK+ L + L R+ D+
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDL 59
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 31.0 bits (70), Expect = 0.60
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138
++ +A ++ ++GP+GCGKT L +A +
Sbjct: 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.2 bits (70), Expect = 0.61
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 111 LAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENII------L 164
+ K +LLVG TGCGKT Q LA + +A TE G + +
Sbjct: 1171 VTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGDIIGAQRPVRNRSETGY 1230
Query: 165 KLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGE 206
L +A D + + + E+ + SDN +++
Sbjct: 1231 GLTKALDIASNVFKTRDIDLIEMHRGISSSDNDNLSFIGESF 1272
Score = 28.9 bits (64), Expect = 2.6
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 49 IIREENKSSITKSHEGIPNPQEILRVLDEYVIGQG------QAKKVLAVAVHNHYKRLAH 102
+ E++++I K +P+ I Y G Q ++ V +Y
Sbjct: 825 LGLLESQNAIEKQKPKVPDHSYI--AFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMR 882
Query: 103 SSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI 136
++ SN +L+ GPT GKT + LAR
Sbjct: 883 AASLSNFP-----LLIQGPTSSGKTSMILYLARE 911
Score = 28.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG 153
LLVG TG GKT + Q LA + T+ + + TE
Sbjct: 467 TLLVGETGTGKTTMIQYLALKLHFKLTVINKSQQTEMS 504
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 31.0 bits (70), Expect = 0.66
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 113 KSNILLVGPTGCGKTYLAQTLA 134
N+L+ GP+GCGKT L + L
Sbjct: 461 GQNLLITGPSGCGKTSLLRVLG 482
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 31.0 bits (70), Expect = 0.71
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVP 140
++ L I+ LVGP G GK+ L + +A ++
Sbjct: 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52
>gnl|CDD|34269 COG4650, RtcR, Sigma54-dependent transcription regulator containing
an AAA-type ATPase domain and a DNA-binding domain
[Transcription / Signal transduction mechanisms].
Length = 531
Score = 30.8 bits (69), Expect = 0.79
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARI------IDVPFTMADATTL 149
+++ ILL GPTG GK++LA+ + + F + TL
Sbjct: 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATL 250
>gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 30.6 bits (69), Expect = 0.80
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 27/175 (15%)
Query: 30 LIAGPTVFICDECVELCMDIIRE---ENKSSITKSHEGIPNPQEILRV-------LDEYV 79
++ P F+ + + +D+I+E E I Q L D +V
Sbjct: 32 VLYAPNEFVRNW-LNSKLDLIKELLQELDGIIKVEVRASAPAQLPLPSGLNPKYTFDNFV 90
Query: 80 IGQGQAKKVLAVAVHNHYKRLAHS-SKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138
+G A K +A + + N + + G G GKT+L Q +
Sbjct: 91 VGPSNRLAYAAA------KAVAENPGGAYNP------LFIYGGVGLGKTHLLQAIGNEAL 138
Query: 139 VPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRK 193
A LT + + V+ + + E+ ++ ID++ ++ K
Sbjct: 139 ANGPNARVVYLTSEDFTNDFVKAL---RDNEMEKFKEKYSLDLLLIDDIQFLAGK 190
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 30.5 bits (69), Expect = 0.81
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARII 137
+ + K I ++GP G GK+ L + LA ++
Sbjct: 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 30.5 bits (69), Expect = 0.93
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDV 139
+ LVGP+G GK+ L + R DV
Sbjct: 31 VALVGPSGSGKSTLVNLIPRFYDV 54
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 30.5 bits (69), Expect = 0.96
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 116 ILLVGPTGCGKTYLAQTLARII 137
+L+VGP G GK+ L + L ++
Sbjct: 30 VLIVGPNGSGKSTLLRLLNGLL 51
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 30.3 bits (68), Expect = 0.97
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKT 127
EIL + DE + L K L ++ VE K I LVGPTG GKT
Sbjct: 166 ELEILDMKDESYEDLRYFSEKLR-------KLLLSLIENLIVE-QKRVIALVGPTGVGKT 217
Query: 128 YLAQTLARI 136
TLA++
Sbjct: 218 ---TTLAKL 223
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 30.2 bits (68), Expect = 1.0
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 21/98 (21%)
Query: 89 LAVAVHNHYKRLAHSSKSSNVELAKSN---ILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145
+++ V N KR +V L + + L+GP+G GKT TL R+I
Sbjct: 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLI-------- 48
Query: 146 ATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVY 183
AG D I+ A D V+ G V+
Sbjct: 49 ------AGLERPDSGTILFGGEDATDVPVQERNVGFVF 80
>gnl|CDD|144592 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1. This
family also contains the NS2 protein. Parvoviruses
encode two non-structural proteins, NS1 and NS2. The
mRNA for NS2 contains the coding sequence for the first
87 amino acids of NS1, then by an alternative splicing
mechanism mRNA from a different reading frame, encoding
the last 78 amino acids, makes up the full length of the
NS2 mRNA. NS1, is the major non-structural protein. It
is essential for DNA replication. It is an 83-kDa
nuclear phosphoprotein. It has DNA helicase and ATPase
activity.
Length = 271
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATT 148
+ GP GKT LAQ +A + + + + T
Sbjct: 116 VWFYGPASTGKTNLAQAIAHAVPL-YGCVNWTN 147
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 30.4 bits (68), Expect = 1.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 115 NILLVGPTGCGKTYLAQTLA-----RIIDVPF-TMADATTLTEAGYVGEDVENIILKLLQ 168
N++L+GP G GKT+LA + I V F T D + +A + +E +L+ L+
Sbjct: 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK 166
Query: 169 AAD 171
D
Sbjct: 167 KVD 169
>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase..
Length = 186
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIID 138
A+ NIL+ G TG GKT L L I
Sbjct: 24 ARKNILISGGTGSGKTTLLNALLAFIP 50
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 30.3 bits (68), Expect = 1.1
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA- 170
SNI++ GPTG GKT + + ++ + + ++ K+L
Sbjct: 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY--QVLSKILNKLG 98
Query: 171 -----------------DYNVERAQRGIVYIDEVDKISRKSDNP--SITRDVSGEGVQQA 211
D ++ + IV +DEVD + K S+ R V+ +
Sbjct: 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVS 158
Query: 212 LLKI 215
++ +
Sbjct: 159 IIAV 162
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 30.2 bits (68), Expect = 1.1
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 19/85 (22%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLA----------RIIDVPFTMADATTL-TEAGYVGED-- 158
A LVG +G GK+ L L R+ + + +V ++
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 159 ------VENIILKLLQAADYNVERA 177
ENI+L A+D + A
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAA 430
>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 29.9 bits (67), Expect = 1.2
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 16/69 (23%)
Query: 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQG-GRKHPQQ 234
RA RGI+Y+DEV+ + + + ALL + + V +G +HP +
Sbjct: 142 RANRGILYVDEVNLLD--------------DHLVDALLDVAAEGVNDVEREGISIRHPAR 187
Query: 235 EFLQVDTTN 243
FL + T N
Sbjct: 188 -FLLIGTMN 195
>gnl|CDD|144183 pfam00493, MCM, MCM2/3/5 family.
Length = 327
Score = 30.2 bits (69), Expect = 1.2
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 34/118 (28%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTM-ADATTLTEAG---YVGEDVENIILKLLQ 168
N+LLVG G K+ L + +A++ P + + AG V D +
Sbjct: 57 DINVLLVGDPGTAKSQLLKYVAKLA--PRAVYTSGKGSSAAGLTAAVVRDPDTG------ 108
Query: 169 AADYNVE-----RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME-GTI 220
++ +E A G+ IDE DK++ E + A+ + ME TI
Sbjct: 109 --EWTLEAGALVLADGGVCCIDEFDKMN--------------EEDRVAIHEAMEQQTI 150
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 118 LVGPTGCGKTYLAQTLARII 137
LVGP+GCGK+ TL RII
Sbjct: 35 LVGPSGCGKS----TLLRII 50
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 30.1 bits (68), Expect = 1.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 91 VAVHNHYKRLAHSSKSSNVEL---AKSNILLVGPTGCGKTYLAQTLARIIDV 139
V + N KR + + ++ L ++L+GP+GCGKT + +A + +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52
>gnl|CDD|31888 COG1702, PhoH, Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms].
Length = 348
Score = 29.9 bits (67), Expect = 1.3
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 35 TVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVH 94
+ V++ ++ + + +++L Q + V + H
Sbjct: 56 RIIGARPLVDVATRVLLTLELLAEVRRGIASIYLEDVLSAFRGAESLQQLEESVEELDTH 115
Query: 95 NHYKRLAHSS-------KSSNVELAKSNILL--VGPTGCGKTYLAQTLA 134
R S ++ E + + ++ +GP G GKTYLA A
Sbjct: 116 FLRGRTRDKSIIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKA 164
>gnl|CDD|32629 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 29.9 bits (67), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 104 SKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID-VPFTMADATTLT 150
+ +E K + L+GP G GK+ LA+ L R+++ VP DA
Sbjct: 94 HAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKG 141
>gnl|CDD|32636 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 29.8 bits (67), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 116 ILLVGPTGCGKTYLAQTLARIID 138
IL+ GPTG GK+ TLA +ID
Sbjct: 128 ILVTGPTGSGKS---TTLAAMID 147
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 29.7 bits (67), Expect = 1.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARI 136
+L+ GP+G GK+ L + LA +
Sbjct: 26 PGDRLLITGPSGTGKSSLFRALAGL 50
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 29.6 bits (67), Expect = 1.6
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 101 AHSSKSSNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV 159
+ S ++SN L +LLVG G GK+ A+ +A +P D L G VGE
Sbjct: 246 SFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF-GGIVGES- 303
Query: 160 ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDN 196
E+ + ++++ A E I++IDE+DK S++
Sbjct: 304 ESRMRQMIRIA----EALSPCILWIDEIDKAFSNSES 336
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 29.3 bits (66), Expect = 1.9
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIIDV 139
+ + K L LVG +G GK+ LA+ + ++
Sbjct: 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARII 137
++ + I+ ++GP G GK+ L +TLA ++
Sbjct: 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 29.2 bits (65), Expect = 2.1
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 116 ILLVGPTGCGKTYLAQTLAR-----IIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA 170
+LL GP G GKT LA +A+ ++++ +D T V+ I +Q
Sbjct: 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEI--NASDERT-------APMVKEKIENAVQNH 379
Query: 171 DYNVERAQRGIVYIDEVD 188
++ + IDE+D
Sbjct: 380 SVLDADSRPVCLVIDEID 397
>gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate transport
and metabolism].
Length = 191
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145
K I+++G +G GK+ + + L+ + + F D
Sbjct: 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 29.4 bits (66), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 93 VHNHYKRLAHSSKSSNVELAKSN---ILLVGPTGCGKTYLAQTLARII 137
+ N KR + ++V L + L+GP+G GK+ L + +A +
Sbjct: 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 29.1 bits (65), Expect = 2.1
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 93 VHNHYKRLAHSSKSSNVELAKSN-ILLVGPTGCGKTYLAQTLARII 137
+ Y + K ++E+ K +LL+GP G GK+ L + L ++
Sbjct: 9 LSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL 54
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 29.1 bits (65), Expect = 2.2
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 118 LVGPTGCGKTYLAQTLARIID----------VPFTMADATTL-TEAGYVGED-------- 158
LVGP+G GK+ +A L R D VP + + L + G VG++
Sbjct: 499 LVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558
Query: 159 VENIILKLLQAADYNVERA 177
ENI L A D +E A
Sbjct: 559 RENIAYGLDNATDEEIEAA 577
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the development
of this type of cancer.
Length = 203
Score = 29.2 bits (66), Expect = 2.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 114 SNILLVGPTGCGKTYL 129
+LL+GP+ GKT L
Sbjct: 1 PTVLLLGPSDSGKTAL 16
>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 29.2 bits (65), Expect = 2.2
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE------DVENIILKLLQA 169
+ ++G GK+ L LA I + G+ D I L
Sbjct: 11 VAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAY 70
Query: 170 ADYNVERAQRGIVYID 185
D V A + + +ID
Sbjct: 71 EDAAVRYANK-VAFID 85
>gnl|CDD|31261 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 29.3 bits (65), Expect = 2.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARII 137
+ ++V PTG GKT +A +
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAIAEL 79
>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
RAD17/RAD24 component [Energy production and conversion,
Replication, recombination and repair].
Length = 634
Score = 29.3 bits (65), Expect = 2.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 112 AKSNILLV-GPTGCGKTYLAQTLARI 136
S ILL+ GP+GCGK+ + L++
Sbjct: 108 LGSRILLLTGPSGCGKSTTVKVLSKE 133
>gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 29.2 bits (65), Expect = 2.4
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 114 SNILLVGPTGCGKT----YLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILK--LL 167
+ILLVG G K+ Y+A+ R + + A LT A + +L+ L
Sbjct: 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGAL 379
Query: 168 QAADYNVERAQRGIVYIDEVDKISRKSDN 196
AD G+ IDE DK++ +
Sbjct: 380 VLAD-------GGVCCIDEFDKMNEEDRV 401
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 28.9 bits (65), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 118 LVGPTGCGKTYLAQTLARII 137
L+GP+GCGKT TL R+I
Sbjct: 31 LLGPSGCGKT----TLLRLI 46
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 29.1 bits (65), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 118 LVGPTGCGKTYLAQTLARII 137
L+GP+GCGKT TL R+I
Sbjct: 36 LLGPSGCGKT----TLLRMI 51
>gnl|CDD|31991 COG1806, COG1806, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 273
Score = 29.1 bits (65), Expect = 2.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 100 LAHSSKSSNVELAKSNILLVGPTGCGKT----YLAQTLARIIDVPFTMAD 145
LAH S L +++++LVG + KT YLA + + P D
Sbjct: 131 LAHDDGQSPRNLDEADVILVGVSRTSKTPTSLYLALQGIKAANYPLVPED 180
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 29.0 bits (65), Expect = 2.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 97 YKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138
Y + + N+E+AK L L+GP+G GKT + + R+I+
Sbjct: 10 YGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52
>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 28.8 bits (63), Expect = 2.8
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
I+++G G GKT L L L A + NI L+L A
Sbjct: 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67
Query: 176 RAQRGIVY------IDEVDKISRKSDNPSITR 201
R+ R Y + D R+S +
Sbjct: 68 RSLRPEYYRGANGILIVYDSTLRESSDELTEE 99
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 29.0 bits (65), Expect = 2.9
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 118 LVGPTGCGKTYLAQTLARII 137
++GP+GCGK+ TL R+I
Sbjct: 34 ILGPSGCGKS----TLLRLI 49
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion..
Length = 165
Score = 28.9 bits (64), Expect = 3.1
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 21/99 (21%)
Query: 115 NILLVGPTGCGKTYLAQTLARIIDVP-----FTMADATTLTEAGYVGEDVENIILK---- 165
IL+ GPTG GKT LA LA I + + + + L
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60
Query: 166 ------------LLQAADYNVERAQRGIVYIDEVDKISR 192
LL A+ ER ++ +DE+ ++ R
Sbjct: 61 VFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVR 99
>gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 28.7 bits (64), Expect = 3.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPF 141
IL++G G G++YL + LA VPF
Sbjct: 1633 ILVIGSIGTGRSYLVKYLATNSYVPF 1658
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 28.6 bits (64), Expect = 3.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 118 LVGPTGCGKTYLAQTLARIID 138
LVG +GCGK+ + L R D
Sbjct: 34 LVGSSGCGKSTVVSLLERFYD 54
>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 28.6 bits (65), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 116 ILLVGPTGCGKTYLAQTLAR 135
I + G +G GKT L +AR
Sbjct: 18 IGIFGGSGTGKTVLLGMIAR 37
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 28.3 bits (63), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 105 KSSNVEL-AKSNILLVGPTGCGKTYLAQTLA 134
N E+ +L+ G +G GKT L + LA
Sbjct: 410 SELNFEVRPGERLLITGESGAGKTSLLRALA 440
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 28.5 bits (64), Expect = 3.7
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 28/119 (23%)
Query: 116 ILLVGPTGCGKTYLAQTLA----------RIIDVPFTMADATTLTE-----AGYVGED-- 158
+ +VGP+G GK+ L L R+ + L G+V +
Sbjct: 33 VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN 92
Query: 159 -------VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQ 210
+EN+ L LL A ER +R ++ V R + PS ++SG G QQ
Sbjct: 93 LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS---ELSG-GQQQ 147
>gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin. Septins are a conserved family of
GTP-binding proteins associated with diverse processes
in dividing and non-dividing cells. They were first
discovered in the budding yeast S. cerevisiae as a set
of genes (CDC3, CDC10, CDC11 and CDC12) required for
normal bud morphology. Septins are also present in
metazoan cells, where they are required for cytokinesis
in some systems, and implicated in a variety of other
processes involving organization of the cell cortex and
exocytosis. In humans, 12 septin genes generate dozens
of polypeptides, many of which comprise heterooligomeric
complexes. Since septin mutants are commonly defective
in cytokinesis and formation of the neck formation of
the neck filaments/septin rings, septins have been
considered to be the primary constituents of the neck
filaments. Septins belong to the GTPase superfamily for
their conserved GTPase motifs and enzymatic activities.
Length = 276
Score = 28.6 bits (65), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 115 NILLVGPTGCGKTYLAQTL 133
NI++VG +G GK+ TL
Sbjct: 6 NIMVVGESGLGKSTFINTL 24
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 28.3 bits (63), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 118 LVGPTGCGKTYLAQTLARIIDV 139
+VG TG GK+ L L R+++
Sbjct: 1171 IVGRTGAGKSSLILALFRLVEP 1192
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 28.3 bits (63), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDV 139
A I +VG TG GK+ L L R ++
Sbjct: 33 AGEKIGIVGRTGAGKSTLILALFRFLEA 60
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 28.2 bits (63), Expect = 4.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 116 ILLVGPTGCGKTYLAQTLARIID 138
+ +VGPTG GKT L L R D
Sbjct: 32 VAIVGPTGAGKTTLINLLMRFYD 54
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 28.4 bits (63), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 116 ILLVGPTGCGKTYLAQTLARII 137
I + GP+GCGK+ L + +A +I
Sbjct: 32 IAITGPSGCGKSTLLKIVASLI 53
>gnl|CDD|109493 pfam00437, GSPII_E, Type II/IV secretion system protein. This
family contains both type II and type IV pathway
secretion proteins from bacteria. VirB11 ATPase is a
subunit of the Agrobacterium tumefaciens transfer DNA
(T-DNA) transfer system, a type IV secretion pathway
required for delivery of T-DNA and effector proteins to
plant cells during infection.
Length = 283
Score = 28.4 bits (64), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIID 138
A+ NIL+ G TG GKT L L I+
Sbjct: 138 ARGNILVSGGTGSGKTTLLYALLNEIN 164
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 28.3 bits (63), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 116 ILLVGPTGCGKTYLAQTLARIID 138
I L G G GKT LA+ LA +I
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIK 51
>gnl|CDD|33076 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
metabolism].
Length = 161
Score = 28.3 bits (63), Expect = 4.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 120 GPTGCGKTYLAQTLARIIDVPFTMAD 145
G +G GK+ + LA + F D
Sbjct: 2 GVSGSGKSTVGSALAERLGAKFIDGD 27
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 28.0 bits (62), Expect = 4.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE 151
N +AK I+ L+GP+GCGK+ L + + F+ L E
Sbjct: 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 28.2 bits (63), Expect = 4.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDV 139
+ +VGP+G GK+ + + L R DV
Sbjct: 30 VAIVGPSGSGKSTILRLLFRFYDV 53
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 27.9 bits (62), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 118 LVGPTGCGKTYLAQTLARIID 138
LVG +G GK+ L L R+I
Sbjct: 318 LVGESGSGKSTLGLALLRLIP 338
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 27.9 bits (62), Expect = 5.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIID 138
I L+G +G GK+ L Q L +
Sbjct: 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53
>gnl|CDD|35575 KOG0354, KOG0354, KOG0354, DEAD-box like helicase [General function
prediction only].
Length = 746
Score = 28.0 bits (62), Expect = 5.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 114 SNILLVGPTGCGKTYLAQTLARI 136
N ++ PTG GKT++A + +
Sbjct: 77 KNTIIALPTGSGKTFIAAVIMKN 99
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 118 LVGPTGCGKTYLAQTLA----------RIIDVPFTMADATTLTE-AGYVGEDVE 160
++GP+G GK+ LA+ + R+ + D L + GY+ +D E
Sbjct: 33 IIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE 86
>gnl|CDD|32390 COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit
[Signal transduction mechanisms / Transcription].
Length = 367
Score = 27.7 bits (61), Expect = 5.7
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 185 DEVDKISRKSDNPSIT-RDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTN 243
D D I I DVSG+GV ALL +M + + G P ++
Sbjct: 164 DYYDFIQLGEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDPADVLETLNRVL 223
Query: 244 ILFICGGAFAGLD 256
+ F L
Sbjct: 224 KQNLEEDMFVTLF 236
>gnl|CDD|34350 COG4735, COG4735, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 211
Score = 27.6 bits (61), Expect = 5.9
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 325 LSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMF 384
+ E LI Y L L I + A+A +T +GL L+ T+F
Sbjct: 110 IEEQLQVLIADYLVAKKA----LGKGSYQLAVILQNAVALQTLGQGLLRGAAYGLVRTLF 165
Query: 385 EL 386
L
Sbjct: 166 SL 167
>gnl|CDD|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase
domain of Thermotoga maritime and similar proteins.
This subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in Thermotoga
maritime glycerophosphodiester phosphodiesterase (TmGDE,
EC 3.1.4.46) and its uncharacterized homologs. Members
in this family show high sequence similarity to
Escherichia coli GP-GDE, which catalyzes the degradation
of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. TmGDE exists as a monomer that might be the
biologically relevant form.
Length = 226
Score = 27.6 bits (62), Expect = 6.0
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 54/183 (29%)
Query: 273 VVKDSDNRPVGEV---LRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPK 329
V+ D + + VG V ++ L ++L K E I L + L +++I + +
Sbjct: 45 VLHDENLKRVGGVDLKVKELTYKELKKLHPGGELIPTLEEV--FRALPNDAIINVEIKDI 102
Query: 330 NALIKQYQCL--FDMED--VELVFHEDALREIAR----CAIA------------------ 363
+A+ + + F+ D + F+ DALRE+ + +
Sbjct: 103 DAVEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEK 162
Query: 364 HKT-------------GARGLRSILE-------KILLDTM---FELPMLKGVSSVIISDD 400
K G +L KI+L T+ +P LKG+ +I+DD
Sbjct: 163 LKLYSLHVPIDAIGYIGFEKFVELLRLLRKLGLKIVLWTVNDPELVPKLKGLVDGVITDD 222
Query: 401 VVK 403
V K
Sbjct: 223 VEK 225
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and
thus affects blood pressure. Renin, also known as
angiotensinogenase, is a circulating enzyme that
participates in the renin-angiotensin system that
mediates extracellular volume, arterial
vasoconstriction, and consequently mean arterial blood
pressure. The enzyme is secreted by the kidneys from
specialized juxtaglomerular cells in response to
decreases in glomerular filtration rate (a consequence
of low blood volume), diminished filtered sodium
chloride and sympathetic nervous system innervation. The
enzyme circulates in the blood stream and hydrolyzes
angiotensinogen secreted from the liver into the peptide
angiotensin I. Angiotensin I is further cleaved in the
lungs by endothelial bound angiotensin converting enzyme
(ACE) into angiotensin II, the final active peptide.
Renin is a member of the aspartic protease family.
Structurally, aspartic proteases are bilobal enzymes,
each lobe contributing a catalytic Aspartate residue,
with an extended active site cleft localized between the
two lobes of the molecule. The N- and C-terminal
domains, although structurally related by a 2-fold axis,
have only limited sequence homology except the vicinity
of the active site. This suggests that the enzymes
evolved by an ancient duplication event. The active site
is located at the groove formed by the two lobes, with
an extended loop projecting over the cleft to form an
11-residue flap, which encloses substrates and
inhibitors in the active site. Specificity is determined
by nearest-neighbor hydrophobic residues surrounding the
catalytic aspartates, and by three residues in the flap.
The enzymes are mostly secreted from cells as inactive
proenzymes that activate autocatalytically at acidic pH.
This family of aspartate proteases is classified by
MEROPS as the peptidase family A1 (pepsin A, clan AA).
Length = 326
Score = 27.8 bits (62), Expect = 6.3
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 89 LAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT--MADA 146
A HN Y +S SS + + + +G K +L+Q + + +P T +
Sbjct: 45 TACVTHNLYD----ASDSSTYKENGTEFTIHYASGTVKGFLSQDIVTVGGIPVTQMFGEV 100
Query: 147 TTL 149
T L
Sbjct: 101 TAL 103
>gnl|CDD|33735 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 27.7 bits (61), Expect = 6.4
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQ-QEFLQV 239
IV ++ + K+ R + R S E V ++++ M+ I + PQ R H Q V
Sbjct: 156 IVNLEWIQKLIRDTS----ERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTV 211
Query: 240 DTTN 243
DT+N
Sbjct: 212 DTSN 215
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 27.5 bits (61), Expect = 6.5
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 116 ILLVGPTGCGKTYLAQTLARI---------ID-VPFTMADATTLTEA-GYVGEDV----- 159
+ +VG +G GK+ L + L + +D V D +L GYV +D
Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561
Query: 160 ---ENIILKLLQAADYNVERA 177
ENI L +A D + A
Sbjct: 562 SIRENIALGNPEATDEEIIEA 582
>gnl|CDD|144015 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 167
Score = 27.6 bits (62), Expect = 6.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 111 LAKSNILLVGPTGCGKTYLAQ 131
L ++L+ PTG GKT
Sbjct: 12 LEGKDVLVQAPTGSGKTLAFL 32
>gnl|CDD|30202 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a family
of proteins similar to phosphoribulokinase (PRK), the
enzyme involved in the Benson-Calvin cycle in
chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis..
Length = 277
Score = 27.6 bits (61), Expect = 6.7
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQ-QEFLQV 239
I+ ++ + KI R + R S E V +L+ M I + PQ R Q V
Sbjct: 150 IINLEWIQKIHRDTAE----RGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQRVPTV 205
Query: 240 DTTNILFIC 248
DT+N FI
Sbjct: 206 DTSNP-FIA 213
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 27.7 bits (61), Expect = 6.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 99 RLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI 136
A SS K ILL GPT GKT + + LAR
Sbjct: 433 ARAISSG-------KFPILLQGPTSSGKTSIIKELARA 463
>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 27.5 bits (61), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPF 141
I + G G GKT +A+ LA + +
Sbjct: 3 ITISGLPGSGKTTVARELAEHLGLKL 28
>gnl|CDD|36563 KOG1349, KOG1349, KOG1349, Gpi-anchor transamidase
[Posttranslational modification, protein turnover,
chaperones].
Length = 309
Score = 27.6 bits (61), Expect = 6.8
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 160 ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQ-QALLKIMEG 218
IIL L N + G VY +E ++ D+ + D G V + L+++ G
Sbjct: 64 SQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEV--DYRGYEVTVENFLRVLTG 121
Query: 219 TIASVPPQGGRKHPQQEFLQVDTTNIL 245
+ P+ R L + +NIL
Sbjct: 122 RHPNNTPRSKRL------LTDEGSNIL 142
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 27.7 bits (61), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIID 138
A+ +I++ G T GKT L L I
Sbjct: 142 ARKSIIICGGTASGKTTLLNALLDFIP 168
>gnl|CDD|133261 cd01852, AIG1, AIG1 (avrRpt2-induced gene 1). This represents
Arabidoposis protein AIG1 that appears to be involved in
plant resistance to bacteria. The Arabidopsis disease
resistance gene RPS2 is involved in recognition of
bacterial pathogens carrying the avirulence gene
avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent
induction early after infection with Pseudomonas
syringae carrying avrRpt2. This subfamily also includes
IAN-4 protein, which has GTP-binding activity and shares
sequence homology with a novel family of putative
GTP-binding proteins: the immuno-associated nucleotide
(IAN) family. The evolutionary conservation of the IAN
family provides a unique example of a plant pathogen
response gene conserved in animals. The IAN/IMAP
subfamily has been proposed to regulate apoptosis in
vertebrates and angiosperm plants, particularly in
relation to cancer, diabetes, and infections. The human
IAN genes were renamed GIMAP (GTPase of the immunity
associated proteins).
Length = 196
Score = 27.5 bits (62), Expect = 7.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 115 NILLVGPTGCGKT 127
++LVG TG GK+
Sbjct: 2 RLVLVGKTGAGKS 14
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 27.3 bits (61), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 116 ILLVGPTGCGKTYLAQTLARII 137
+L+VGP GKT L + L +
Sbjct: 3 VLVVGPKDSGKTTLIRKLLNYL 24
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 27.4 bits (61), Expect = 7.5
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 32/117 (27%)
Query: 105 KSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENII 163
++ + + I+ L+GP G GKT T +I G V D I+
Sbjct: 17 NGVSLSVKQGEIVGLLGPNGAGKT----TTFYMI--------------VGLVKPDSGKIL 58
Query: 164 LKLLQAADYNV-ERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219
L + +RA+ GI Y+ + SI R ++ V++ +L ++E
Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQ---------EASIFRKLT---VEENILAVLEIR 103
>gnl|CDD|36169 KOG0951, KOG0951, KOG0951, RNA helicase BRR2, DEAD-box superfamily
[RNA processing and modification].
Length = 1674
Score = 27.6 bits (61), Expect = 7.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 99 RLAHSSKSSNVELAKSNILLVGPTGCGKTYLA 130
++ ++ N+LL PTG GKT +A
Sbjct: 316 KVYDAALRG-----DENMLLCAPTGAGKTNVA 342
>gnl|CDD|146942 pfam04548, AIG1, AIG1 family. Arabidopsis protein AIG1 appears to
be involved in plant resistance to bacteria.
Length = 200
Score = 27.6 bits (62), Expect = 7.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 115 NILLVGPTGCGK 126
I+LVG TG GK
Sbjct: 2 RIVLVGKTGNGK 13
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 27.4 bits (61), Expect = 7.8
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 4/20 (20%)
Query: 118 LVGPTGCGKTYLAQTLARII 137
L+GP+GCGKT TL R+I
Sbjct: 31 LLGPSGCGKT----TLLRLI 46
>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
[Amino acid transport and metabolism].
Length = 856
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137
+ +AH+S+ EL + L G G +LA R+
Sbjct: 97 QLIAHTSRVLYRELEEETGLHTGWIQNGGIFLASNRQRLD 136
>gnl|CDD|37485 KOG2274, KOG2274, KOG2274, Predicted importin 9 [Intracellular
trafficking, secretion, and vesicular transport, Nuclear
structure].
Length = 1005
Score = 27.3 bits (60), Expect = 8.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 140 PFTMADATTLTEAGYVGEDVENIILKLLQAAD 171
P T+ +E V +++ +LLQ A
Sbjct: 574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAA 605
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 27.2 bits (60), Expect = 8.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 116 ILLVGPTGCGKTYLAQTLARIID 138
++L+GP+G GKT + + R+I+
Sbjct: 30 LVLIGPSGSGKTTTLKMINRLIE 52
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 27.4 bits (61), Expect = 8.9
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 25/102 (24%)
Query: 93 VHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE 151
+ Y ++ + + ++E+ + I+ L+G G GKT L +T+ ++
Sbjct: 9 LSAGYGKI-QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-----------R 56
Query: 152 AGYV---GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190
+G + GED+ L ERA+ GI Y+ E +I
Sbjct: 57 SGRIIFDGEDITG-----LPPH----ERARLGIAYVPEGRRI 89
>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 27.2 bits (60), Expect = 9.4
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 50 IREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNV 109
+ + ++ E++ + +IG+ A + L + +A S
Sbjct: 197 LSSLKERLEEENLALEEQLSEVVLEVGG-IIGRSPAMRQLLKEIE----VVAKSD----- 246
Query: 110 ELAKSNILLVGPTGCGKTYLAQTL 133
S +L+ G TG GK +A+ +
Sbjct: 247 ----STVLIRGETGTGKELVARAI 266
>gnl|CDD|30000 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria..
Length = 369
Score = 27.1 bits (60), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 120 GPTGCGKTYLAQTLAR 135
GP GCGKT + Q+L++
Sbjct: 164 GPFGCGKTVIQQSLSK 179
>gnl|CDD|29997 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as twitching
motility..
Length = 198
Score = 27.1 bits (60), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 116 ILLVGPTGCGKTYLAQTLARIID 138
+L+ GPTG GK+ TLA +ID
Sbjct: 4 VLVTGPTGSGKS---TTLAAMID 23
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 27.2 bits (60), Expect = 9.9
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 23/112 (20%)
Query: 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY------VGEDVENI--ILK 165
+ L GP G GKT A AR ++ A V E ++N +
Sbjct: 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTV 117
Query: 166 LLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
LL+ +D + I+ +DE D ++ + Q AL + ME
Sbjct: 118 LLKRSDGYPCPPFK-IIILDECDSMTSDA--------------QAALRRTME 154
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,838,676
Number of extensions: 256306
Number of successful extensions: 1183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 221
Length of query: 424
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,189,273
Effective search space: 1374081544
Effective search space used: 1374081544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)