BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780271|ref|YP_003064684.1| ATP-dependent protease
ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str.
psy62]
(424 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK 60
MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK
Sbjct: 1 MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK 60
Query: 61 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG 120
SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG
Sbjct: 61 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG 120
Query: 121 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 180
PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG
Sbjct: 121 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 180
Query: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD 240
IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD
Sbjct: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD 240
Query: 241 TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI 300
TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI
Sbjct: 241 TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI 300
Query: 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360
PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC
Sbjct: 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360
Query: 361 AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA 420
AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA
Sbjct: 361 AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA 420
Query: 421 NVSA 424
NVSA
Sbjct: 421 NVSA 424
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGK 126
+P+EI+ LD Y+IGQ AK+ +A+A+ N ++R + + EL NILLVGPTG GK
Sbjct: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66
Query: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179
T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R
Sbjct: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118
Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 57/222 (25%)
Query: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239
GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ +
Sbjct: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291
Query: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299
+T +ILFI GAF +RP L
Sbjct: 292 NTDHILFIASGAFHV------------------------SRPAD---------------L 312
Query: 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359
+PE GR PV L+ L+++ IL++ ++ LI QY+ L E + L F ED++ +A
Sbjct: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372
Query: 360 CAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVI 396
A+ + GAR L++++E++L D F L+ + VI
Sbjct: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 75/346 (21%)
Query: 98 KRLAHSSKSSNVELAKSN-----ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE- 151
K+L+ S K + L+ N + GPTG GKT +++ LA + V D + E
Sbjct: 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546
Query: 152 ----------AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201
GYVG I+ AD +V++ +V +DE++K
Sbjct: 547 HAVSRLIGAPPGYVGFGQGGIL------AD-SVDQNPYSVVLLDEIEK------------ 587
Query: 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISA 261
S V LL+IM+ I + Q G+K + + + TTN GA
Sbjct: 588 --SHPDVLNILLQIMDYGI--LTDQSGKKISFRNVILIMTTN-----AGAL--------- 629
Query: 262 RGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSL 321
KA IGF + D ++ E LRN L PEF+ RL + L +
Sbjct: 630 EMSKARIGFGSSRNDDADK---EALRNF---------LSPEFLNRLDSIIPFFPLSSD-- 675
Query: 322 IRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK---- 377
I+ + + I + + + + F E+ + + K GAR L I+++
Sbjct: 676 --IIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733
Query: 378 ILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423
L D + + KG V +S + K + P ++ + + +N+S
Sbjct: 734 PLADEILFGKLKKGGGVVKVSLNPDKSASSP--IFFEIENSGSNIS 777
Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLAR-IID--VP--------FTMADATTLTEAGYVGEDVE 160
+K+N L VG G GKT +A+ A+ I+D VP F++ + Y G D E
Sbjct: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282
Query: 161 NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVS 204
I K+++ +E I+YIDE+ + I+ D S
Sbjct: 283 ERIKKIVK----EIESYANAILYIDEIHTLVGAGSASGISVDAS 322
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175
+LLVGP G GKT LA+ +A +VPF + E +VG + QA + +
Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQAKNNS-- 240
Query: 176 RAQRGIVYIDEVDKISR 192
IV++DE+D + R
Sbjct: 241 ---PCIVFVDEIDAVGR 254
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171
A ++L VGP G GKT LAQ +AR + V F + +AG + + N+
Sbjct: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103
Query: 172 YNVERAQRGIVYIDEVDKIS 191
R +++IDE+ ++S
Sbjct: 104 -----EDRDVLFIDEIHRLS 118
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 44 ELCMDIIREENKSSITKSHEGIP-------NPQEILRV---LDEYVIGQGQAKKVLAVAV 93
++ +++ +N ++I GIP + ++ LR+ + + VIGQ A + +V
Sbjct: 525 DMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVE----SV 580
Query: 94 HNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137
N +R + + + + +GPTG GKT L ++LAR++
Sbjct: 581 SNALRRFRAGLQDPQRPMG--SFMFLGPTGVGKTELVKSLARLL 622
Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 112 AKSNILLVGPTGCGKTYLAQTLA-RII--DVPFTM 143
K+N +L+G G GKT + + LA RII D+P ++
Sbjct: 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL 232
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 33.5 bits (75), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV--ENII-LKLLQAADY 172
+ L+GP G GK+ +A+ + II GYV + V EN + L L++
Sbjct: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98
Query: 173 NVERAQRGIVYI-DEVDKISRKSDNPSITRDVSGEGVQQALL 213
++ ++ ++ I D V+ I + + N +D+SG Q+ALL
Sbjct: 99 SMPSSRDDVLQILDRVNLIGKYNRN---IKDLSGGEFQRALL 137
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 29.6 bits (65), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 118 LVGPTGCGKTYLAQTLARIIDVPFT-MADATTLTEA-------GYVGEDVENIILKLLQA 169
VGP G GKT LAQ++A+ + M+ EA Y+G II L +A
Sbjct: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430
Query: 170 ADYNVERAQRGIVYIDEVDKI 190
N ++ +DE+DK+
Sbjct: 431 KRSN------PLLLLDEIDKM 445
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 28.9 bits (63), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 113 KSNILLVGPTGCGKTYLAQTLARIID 138
+ N+L+ G TG GKT L L R ID
Sbjct: 250 RCNVLISGGTGSGKTTLLNCLTRYID 275
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 27.3 bits (59), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARI 136
N+++ ++++ L+GP+GCGK+ + L R+
Sbjct: 26 NLKIPQNSVTALIGPSGCGKSTFLRCLNRM 55
>537021.9.peg.472_1
Length = 369
Score = 26.9 bits (58), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157
K L ++ KS + + +L G G GKT A+ +AR ++ D T+ G+ GE
Sbjct: 9 KTLTNAFKSGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GE 64
Query: 158 DVENII 163
+ II
Sbjct: 65 HCQAII 70
>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Length = 266
Score = 26.2 bits (56), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 259 ISARGEKASIGFSAV-----VKDSDNRPVGE-VLRNLESEDLVKFGLIPEFIGRL 307
+ + EK SI F + + D+ PVG+ V+ L + +V FG P F+GRL
Sbjct: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 100 LAHSSKSSNVELAKSN-------ILLVGPTGCGKTYLAQTLA 134
L HS+ V L S ++LVGP+G GK+ LA +
Sbjct: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 118 LVGPTGCGKTYLAQTLARIID 138
LVGP+G GK+ + L R+ D
Sbjct: 384 LVGPSGSGKSTIINLLMRMYD 404
>gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus
Liberibacter asiaticus str. psy62]
Length = 172
Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 350 HEDALREIARCAIAHKTGARGLRSILEKI 378
H+D + I +I TGA+G R E I
Sbjct: 121 HQDIMAYIRTVSIKQITGAQGFRYFKEDI 149
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN-V 174
+ ++GP G GK+ L+ L+ D T D Y GE + D++ V
Sbjct: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL------YKGESI----------LDWSIV 75
Query: 175 ERAQRGI 181
ERA +GI
Sbjct: 76 ERASKGI 82
>gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
Length = 296
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 21 GKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSS---ITKSHEGIPNPQEILRVLDE 77
GKS + V K++ G C ECV L + + +K+ + +S + I E++ V
Sbjct: 228 GKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGV-SH 286
Query: 78 YVIGQ 82
+V+G+
Sbjct: 287 FVVGK 291
>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 214
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 133 LARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190
+A+ I FT+ D E GY G+ +E I K ++ +N + YIDEVDKI
Sbjct: 108 MAKDIAQLFTLIDNI---ENGY-GQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKI 161
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 118 LVGPTGCGKTYLAQTLARIIDV 139
L+G +G GK+ +A+ L R+ D+
Sbjct: 388 LIGESGVGKSTVAKLLYRLYDI 409
>gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 290
Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY--VGEDVENIILKLLQAADYN 173
I++V G G +A L I D + + L GY +G+D +LKLL YN
Sbjct: 34 IVIVAGAGLGGFVMANPLKVIKD-----SGVSLLEIFGYKALGQDTYCDVLKLLYILMYN 88
Query: 174 VERAQR 179
+++ R
Sbjct: 89 LKKGSR 94
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
Query: 117 LLVGPTGCGKTYLAQTLARIID 138
LL+G TG GKT+ T+A++I+
Sbjct: 172 LLLGVTGSGKTF---TMAKVIE 190
>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 410
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 129 LAQTLARIIDVPFTMADATTLTE------AGYVGEDVENIILKLLQAADYNVE 175
+A++LAR + + + +A L G+VGEDV +L D+N++
Sbjct: 84 IARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 352 DALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGK 405
DAL + +++ K G RG+ L+ ++ MF++ + + II+ + VK +
Sbjct: 502 DALSILVHRSVSEKRG-RGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKAR 554
>gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 212
Score = 23.1 bits (48), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 362 IAHKTGARGLRSILEKILLDTMFELPMLKGVSSV--------IISDDVVKGKA 406
+AH R L +LEKI +D + ++ + G + V I+S ++++G++
Sbjct: 156 VAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMRGQS 208
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,897
Number of Sequences: 1233
Number of extensions: 10885
Number of successful extensions: 72
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 30
length of query: 424
length of database: 328,796
effective HSP length: 76
effective length of query: 348
effective length of database: 235,088
effective search space: 81810624
effective search space used: 81810624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)