BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] (424 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%) Query: 1 MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK 60 MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK Sbjct: 1 MSKASNNGSVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITK 60 Query: 61 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG 120 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG Sbjct: 61 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVG 120 Query: 121 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 180 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG Sbjct: 121 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRG 180 Query: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD 240 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD Sbjct: 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVD 240 Query: 241 TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI 300 TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI Sbjct: 241 TTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI 300 Query: 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC Sbjct: 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360 Query: 361 AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA 420 AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA Sbjct: 361 AIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKA 420 Query: 421 NVSA 424 NVSA Sbjct: 421 NVSA 424 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGK 126 +P+EI+ LD Y+IGQ AK+ +A+A+ N ++R + + EL NILLVGPTG GK Sbjct: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 Query: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 Query: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 +T +ILFI GAF +RP L Sbjct: 292 NTDHILFIASGAFHV------------------------SRPAD---------------L 312 Query: 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359 +PE GR PV L+ L+++ IL++ ++ LI QY+ L E + L F ED++ +A Sbjct: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 Query: 360 CAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVI 396 A+ + GAR L++++E++L D F L+ + VI Sbjct: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 75/346 (21%) Query: 98 KRLAHSSKSSNVELAKSN-----ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE- 151 K+L+ S K + L+ N + GPTG GKT +++ LA + V D + E Sbjct: 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546 Query: 152 ----------AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201 GYVG I+ AD +V++ +V +DE++K Sbjct: 547 HAVSRLIGAPPGYVGFGQGGIL------AD-SVDQNPYSVVLLDEIEK------------ 587 Query: 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISA 261 S V LL+IM+ I + Q G+K + + + TTN GA Sbjct: 588 --SHPDVLNILLQIMDYGI--LTDQSGKKISFRNVILIMTTN-----AGAL--------- 629 Query: 262 RGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSL 321 KA IGF + D ++ E LRN L PEF+ RL + L + Sbjct: 630 EMSKARIGFGSSRNDDADK---EALRNF---------LSPEFLNRLDSIIPFFPLSSD-- 675 Query: 322 IRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK---- 377 I+ + + I + + + + F E+ + + K GAR L I+++ Sbjct: 676 --IIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 Query: 378 ILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423 L D + + KG V +S + K + P ++ + + +N+S Sbjct: 734 PLADEILFGKLKKGGGVVKVSLNPDKSASSP--IFFEIENSGSNIS 777 Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%) Query: 112 AKSNILLVGPTGCGKTYLAQTLAR-IID--VP--------FTMADATTLTEAGYVGEDVE 160 +K+N L VG G GKT +A+ A+ I+D VP F++ + Y G D E Sbjct: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282 Query: 161 NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVS 204 I K+++ +E I+YIDE+ + I+ D S Sbjct: 283 ERIKKIVK----EIESYANAILYIDEIHTLVGAGSASGISVDAS 322 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175 +LLVGP G GKT LA+ +A +VPF + E +VG + QA + + Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQAKNNS-- 240 Query: 176 RAQRGIVYIDEVDKISR 192 IV++DE+D + R Sbjct: 241 ---PCIVFVDEIDAVGR 254 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 14/80 (17%) Query: 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 A ++L VGP G GKT LAQ +AR + V F + +AG + + N+ Sbjct: 53 ALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTNL--------- 103 Query: 172 YNVERAQRGIVYIDEVDKIS 191 R +++IDE+ ++S Sbjct: 104 -----EDRDVLFIDEIHRLS 118 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 16/104 (15%) Query: 44 ELCMDIIREENKSSITKSHEGIP-------NPQEILRV---LDEYVIGQGQAKKVLAVAV 93 ++ +++ +N ++I GIP + ++ LR+ + + VIGQ A + +V Sbjct: 525 DMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVE----SV 580 Query: 94 HNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 N +R + + + + +GPTG GKT L ++LAR++ Sbjct: 581 SNALRRFRAGLQDPQRPMG--SFMFLGPTGVGKTELVKSLARLL 622 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Query: 112 AKSNILLVGPTGCGKTYLAQTLA-RII--DVPFTM 143 K+N +L+G G GKT + + LA RII D+P ++ Sbjct: 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL 232 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 33.5 bits (75), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV--ENII-LKLLQAADY 172 + L+GP G GK+ +A+ + II GYV + V EN + L L++ Sbjct: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98 Query: 173 NVERAQRGIVYI-DEVDKISRKSDNPSITRDVSGEGVQQALL 213 ++ ++ ++ I D V+ I + + N +D+SG Q+ALL Sbjct: 99 SMPSSRDDVLQILDRVNLIGKYNRN---IKDLSGGEFQRALL 137 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 29.6 bits (65), Expect = 0.094, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%) Query: 118 LVGPTGCGKTYLAQTLARIIDVPFT-MADATTLTEA-------GYVGEDVENIILKLLQA 169 VGP G GKT LAQ++A+ + M+ EA Y+G II L +A Sbjct: 371 FVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA 430 Query: 170 ADYNVERAQRGIVYIDEVDKI 190 N ++ +DE+DK+ Sbjct: 431 KRSN------PLLLLDEIDKM 445 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 28.9 bits (63), Expect = 0.16, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 16/26 (61%) Query: 113 KSNILLVGPTGCGKTYLAQTLARIID 138 + N+L+ G TG GKT L L R ID Sbjct: 250 RCNVLISGGTGSGKTTLLNCLTRYID 275 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 27.3 bits (59), Expect = 0.51, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%) Query: 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARI 136 N+++ ++++ L+GP+GCGK+ + L R+ Sbjct: 26 NLKIPQNSVTALIGPSGCGKSTFLRCLNRM 55 >537021.9.peg.472_1 Length = 369 Score = 26.9 bits (58), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 98 KRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157 K L ++ KS + + +L G G GKT A+ +AR ++ D T+ G+ GE Sbjct: 9 KTLTNAFKSGRI---AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GE 64 Query: 158 DVENII 163 + II Sbjct: 65 HCQAII 70 >gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 26.2 bits (56), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%) Query: 259 ISARGEKASIGFSAV-----VKDSDNRPVGE-VLRNLESEDLVKFGLIPEFIGRL 307 + + EK SI F + + D+ PVG+ V+ L + +V FG P F+GRL Sbjct: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRL 175 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%) Query: 100 LAHSSKSSNVELAKSN-------ILLVGPTGCGKTYLAQTLA 134 L HS+ V L S ++LVGP+G GK+ LA + Sbjct: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 118 LVGPTGCGKTYLAQTLARIID 138 LVGP+G GK+ + L R+ D Sbjct: 384 LVGPSGSGKSTIINLLMRMYD 404 >gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter asiaticus str. psy62] Length = 172 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 350 HEDALREIARCAIAHKTGARGLRSILEKI 378 H+D + I +I TGA+G R E I Sbjct: 121 HQDIMAYIRTVSIKQITGAQGFRYFKEDI 149 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 17/67 (25%) Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN-V 174 + ++GP G GK+ L+ L+ D T D Y GE + D++ V Sbjct: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL------YKGESI----------LDWSIV 75 Query: 175 ERAQRGI 181 ERA +GI Sbjct: 76 ERASKGI 82 >gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 21 GKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSS---ITKSHEGIPNPQEILRVLDE 77 GKS + V K++ G C ECV L + + +K+ + +S + I E++ V Sbjct: 228 GKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGV-SH 286 Query: 78 YVIGQ 82 +V+G+ Sbjct: 287 FVVGK 291 >gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Length = 214 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 133 LARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190 +A+ I FT+ D E GY G+ +E I K ++ +N + YIDEVDKI Sbjct: 108 MAKDIAQLFTLIDNI---ENGY-GQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKI 161 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 118 LVGPTGCGKTYLAQTLARIIDV 139 L+G +G GK+ +A+ L R+ D+ Sbjct: 388 LIGESGVGKSTVAKLLYRLYDI 409 >gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] Length = 290 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY--VGEDVENIILKLLQAADYN 173 I++V G G +A L I D + + L GY +G+D +LKLL YN Sbjct: 34 IVIVAGAGLGGFVMANPLKVIKD-----SGVSLLEIFGYKALGQDTYCDVLKLLYILMYN 88 Query: 174 VERAQR 179 +++ R Sbjct: 89 LKKGSR 94 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 3/22 (13%) Query: 117 LLVGPTGCGKTYLAQTLARIID 138 LL+G TG GKT+ T+A++I+ Sbjct: 172 LLLGVTGSGKTF---TMAKVIE 190 >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 129 LAQTLARIIDVPFTMADATTLTE------AGYVGEDVENIILKLLQAADYNVE 175 +A++LAR + + + +A L G+VGEDV +L D+N++ Sbjct: 84 IARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 352 DALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGK 405 DAL + +++ K G RG+ L+ ++ MF++ + + II+ + VK + Sbjct: 502 DALSILVHRSVSEKRG-RGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKAR 554 >gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] Length = 212 Score = 23.1 bits (48), Expect = 8.7, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%) Query: 362 IAHKTGARGLRSILEKILLDTMFELPMLKGVSSV--------IISDDVVKGKA 406 +AH R L +LEKI +D + ++ + G + V I+S ++++G++ Sbjct: 156 VAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMRGQS 208 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 259,897 Number of Sequences: 1233 Number of extensions: 10885 Number of successful extensions: 72 Number of sequences better than 100.0: 25 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 30 length of query: 424 length of database: 328,796 effective HSP length: 76 effective length of query: 348 effective length of database: 235,088 effective search space: 81810624 effective search space used: 81810624 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)